Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005619A_C01 KMC005619A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_039279.1| ATP synthase CF0 A chain [Marchantia polymorpha... 154 2e-44
ref|NP_569617.1| ATP synthase CF0 A chain [Psilotum nudum] gi|18... 153 5e-44
ref|NP_777394.1| ATPase synthase IV subunit [Anthoceros formosae... 144 2e-41
ref|NP_045785.1| ATP synthase CF0 A chain [Chlorella vulgaris] g... 143 5e-40
sp|P35008|ATPI_GALSU ATP synthase A chain precursor (Subunit IV)... 143 8e-40
>ref|NP_039279.1| ATP synthase CF0 A chain [Marchantia polymorpha]
gi|114656|sp|P06289|ATPI_MARPO ATP synthase A chain
precursor (Subunit IV) gi|67927|pir||LWLV6
H+-transporting two-sector ATPase (EC 3.6.3.14) chain a
- liverwort (Marchantia polymorpha) chloroplast
gi|11652|emb|CAA28065.1| atpI [Marchantia polymorpha]
Length = 248
Score = 154 bits (389), Expect(2) = 2e-44
Identities = 78/90 (86%), Positives = 84/90 (92%)
Frame = -1
Query: 462 HDIYTTVALALLTSVAYFYAGISNKGLAYFG*YIQPTPILLPINILEDCTKPLSLSFRLF 283
+DI TTVALALLTSVAYFYAG+ KGL+YFG YIQPTP+LLPINILED TKPLSLSFRLF
Sbjct: 133 NDINTTVALALLTSVAYFYAGLHKKGLSYFGKYIQPTPVLLPINILEDFTKPLSLSFRLF 192
Query: 282 GNILADELVVVVLVSLVPLVVPIPVMFLGL 193
GNILADELVV VL+SLVPLVVPIP+MFLGL
Sbjct: 193 GNILADELVVAVLISLVPLVVPIPMMFLGL 222
Score = 45.8 bits (107), Expect(2) = 2e-44
Identities = 23/26 (88%), Positives = 24/26 (91%)
Frame = -2
Query: 200 LDLFTSGIQALIFATLAAAYIGESMD 123
L LFTS IQALIFATLAAAYIGESM+
Sbjct: 220 LGLFTSAIQALIFATLAAAYIGESME 245
>ref|NP_569617.1| ATP synthase CF0 A chain [Psilotum nudum]
gi|18389452|dbj|BAB84204.1| ATP synthase subunit CF0 IV
[Psilotum nudum]
Length = 248
Score = 153 bits (386), Expect(2) = 5e-44
Identities = 78/90 (86%), Positives = 84/90 (92%)
Frame = -1
Query: 462 HDIYTTVALALLTSVAYFYAGISNKGLAYFG*YIQPTPILLPINILEDCTKPLSLSFRLF 283
+DI TTVALALLTSVAYFYAG+ KGL+YFG YI+PTPILLPINILED TKPLSLSFRLF
Sbjct: 133 NDINTTVALALLTSVAYFYAGLHKKGLSYFGRYIKPTPILLPINILEDFTKPLSLSFRLF 192
Query: 282 GNILADELVVVVLVSLVPLVVPIPVMFLGL 193
GNILADELVV VL+SLVPLVVPIP+MFLGL
Sbjct: 193 GNILADELVVAVLISLVPLVVPIPMMFLGL 222
Score = 45.8 bits (107), Expect(2) = 5e-44
Identities = 23/26 (88%), Positives = 24/26 (91%)
Frame = -2
Query: 200 LDLFTSGIQALIFATLAAAYIGESMD 123
L LFTS IQALIFATLAAAYIGESM+
Sbjct: 220 LGLFTSAIQALIFATLAAAYIGESME 245
>ref|NP_777394.1| ATPase synthase IV subunit [Anthoceros formosae]
gi|27807855|dbj|BAC55330.1| ATPase synthase IV subunit
[Anthoceros formosae] gi|27807953|dbj|BAC55421.1| ATPase
synthase IV subunit [Anthoceros formosae]
Length = 248
Score = 144 bits (363), Expect(2) = 2e-41
Identities = 75/90 (83%), Positives = 80/90 (88%)
Frame = -1
Query: 462 HDIYTTVALALLTSVAYFYAGISNKGLAYFG*YIQPTPILLPINILEDCTKPLSLSFRLF 283
+DI TTVALAL TSVAYFYAG+ KGL+Y G YIQPTPILLPINILED TKPL LSFRLF
Sbjct: 133 NDINTTVALALPTSVAYFYAGLRKKGLSYSGKYIQPTPILLPINILEDFTKPLPLSFRLF 192
Query: 282 GNILADELVVVVLVSLVPLVVPIPVMFLGL 193
GNILADELVV V +SLVPLVVPIP+MFLGL
Sbjct: 193 GNILADELVVAVPISLVPLVVPIPMMFLGL 222
Score = 45.8 bits (107), Expect(2) = 2e-41
Identities = 23/26 (88%), Positives = 24/26 (91%)
Frame = -2
Query: 200 LDLFTSGIQALIFATLAAAYIGESMD 123
L LFTS IQALIFATLAAAYIGESM+
Sbjct: 220 LGLFTSAIQALIFATLAAAYIGESME 245
>ref|NP_045785.1| ATP synthase CF0 A chain [Chlorella vulgaris]
gi|3023366|sp|P56295|ATPI_CHLVU ATP synthase A chain
precursor (Subunit IV) gi|7436201|pir||T07213
H+-transporting two-sector ATPase (EC 3.6.3.14) chain a
- Chlorella vulgaris chloroplast
gi|2224376|dbj|BAA57860.1| ATP synthase CF0 A chain
(subunit IV) [Chlorella vulgaris]
Length = 247
Score = 143 bits (360), Expect(2) = 5e-40
Identities = 75/90 (83%), Positives = 78/90 (86%)
Frame = -1
Query: 462 HDIYTTVALALLTSVAYFYAGISNKGLAYFG*YIQPTPILLPINILEDCTKPLSLSFRLF 283
+DI TTVALALLTS+AYFYAGIS KGL YF YI P LLPINILED TKPLSLSFRLF
Sbjct: 132 NDINTTVALALLTSIAYFYAGISKKGLGYFKRYISPAAFLLPINILEDLTKPLSLSFRLF 191
Query: 282 GNILADELVVVVLVSLVPLVVPIPVMFLGL 193
GNILADELVV VLVSLVPLVVPIP+M LGL
Sbjct: 192 GNILADELVVGVLVSLVPLVVPIPIMLLGL 221
Score = 42.4 bits (98), Expect(2) = 5e-40
Identities = 20/26 (76%), Positives = 23/26 (87%)
Frame = -2
Query: 200 LDLFTSGIQALIFATLAAAYIGESMD 123
L LFTS IQAL+FATLA AYIGES++
Sbjct: 219 LGLFTSAIQALVFATLAGAYIGESVE 244
>sp|P35008|ATPI_GALSU ATP synthase A chain precursor (Subunit IV) gi|629432|pir||S39515
H+-transporting two-sector ATPase (EC 3.6.3.14) chain a
- red alga (Cyanidium caldarium) chloroplast
gi|429173|emb|CAA48020.1| H(+)-transporting ATP synthase
[Galdieria sulphuraria]
Length = 233
Score = 143 bits (361), Expect(2) = 8e-40
Identities = 74/90 (82%), Positives = 79/90 (87%)
Frame = -1
Query: 462 HDIYTTVALALLTSVAYFYAGISNKGLAYFG*YIQPTPILLPINILEDCTKPLSLSFRLF 283
+DI TT ALALLTS+AYFYAGIS KGL YF YI+PTPILLPINILED TKPLSLSFRLF
Sbjct: 119 NDINTTAALALLTSLAYFYAGISKKGLRYFSRYIKPTPILLPINILEDFTKPLSLSFRLF 178
Query: 282 GNILADELVVVVLVSLVPLVVPIPVMFLGL 193
GNILADELVV VL LVPL+VP+PVM LGL
Sbjct: 179 GNILADELVVSVLTLLVPLIVPLPVMMLGL 208
Score = 41.2 bits (95), Expect(2) = 8e-40
Identities = 20/26 (76%), Positives = 23/26 (87%)
Frame = -2
Query: 200 LDLFTSGIQALIFATLAAAYIGESMD 123
L LF S IQALIFATLAAAYIGE+++
Sbjct: 206 LGLFASSIQALIFATLAAAYIGEAIE 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,390,667
Number of Sequences: 1393205
Number of extensions: 6294587
Number of successful extensions: 14986
Number of sequences better than 10.0: 400
Number of HSP's better than 10.0 without gapping: 14555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14945
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
