Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005617A_C01 KMC005617A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera] 74 8e-13
gb|AAO26683.1|AF478369_1 gag-pol polyprotein [Vitis vinifera] 73 2e-12
gb|AAO26684.1|AF478370_1 gag-pol polyprotein [Vitis vinifera] 73 2e-12
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 72 3e-12
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor] 67 9e-11
>gb|AAO26690.1|AF478377_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 74.3 bits (181), Expect = 8e-13
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Frame = +1
Query: 10 NLISWKSKETIIVARSRAEAEFRVMATATCQSSLLPKPRDLVDVSLITHT---*DNKAAL 180
NL++WKSK+ +V+RS AE+E+R MA ATC+ + + V + DN+AAL
Sbjct: 196 NLVAWKSKKQSVVSRSSAESEYRAMAQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQAAL 255
Query: 181 HM-PKI*FSMRAKHIEIDFHFL*DRRFYLDISTRFVNSNDQLTDVFTKSLRG 333
H+ + R KHIE+D HF+ ++ +ST +V + +QL D+FTK+L G
Sbjct: 256 HIAANPVYHERTKHIEVDCHFIREKIEENLVSTDYVKTGEQLGDIFTKALNG 307
>gb|AAO26683.1|AF478369_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 73.2 bits (178), Expect = 2e-12
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Frame = +1
Query: 10 NLISWKSKETIIVARSRAEAEFRVMATATCQSSLLPKPRDLVDVSLITHT---*DNKAAL 180
NL++WKSK+ +V+RS AE+E+R M+ ATC+ + + V + DN+AAL
Sbjct: 196 NLVAWKSKKQSVVSRSSAESEYRAMSRATCEIIWIHQLLCEVGMKCTMPAKLWCDNQAAL 255
Query: 181 HM-PKI*FSMRAKHIEIDFHFL*DRRFYLDISTRFVNSNDQLTDVFTKSLRG 333
H+ + R KHIE+D HF+ ++ +ST +V + +QL D+FTK+L G
Sbjct: 256 HIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNG 307
>gb|AAO26684.1|AF478370_1 gag-pol polyprotein [Vitis vinifera]
Length = 326
Score = 73.2 bits (178), Expect = 2e-12
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Frame = +1
Query: 10 NLISWKSKETIIVARSRAEAEFRVMATATCQSSLLPKPRDLVDVSLITHT---*DNKAAL 180
NL++WKSK+ +V+RS AE+E+R M+ ATC+ + + V + DN+AAL
Sbjct: 196 NLVAWKSKKQSVVSRSSAESEYRAMSQATCEIIWIHQLLCEVGMKCTMPAKLWCDNQAAL 255
Query: 181 HM-PKI*FSMRAKHIEIDFHFL*DRRFYLDISTRFVNSNDQLTDVFTKSLRG 333
H+ + R KHIE+D HF+ ++ +ST +V + +QL D+FTK+L G
Sbjct: 256 HIAANPVYHERTKHIEVDCHFIREKIEENLVSTGYVKTGEQLGDIFTKALNG 307
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein
Length = 1439
Score = 72.4 bits (176), Expect = 3e-12
Identities = 45/113 (39%), Positives = 63/113 (54%), Gaps = 4/113 (3%)
Frame = +1
Query: 1 LSDNLISWKSKETIIVARSRAEAEFRVMATATCQSSLLPKPRDLVDVSLITHT*---DNK 171
L NLISW SK+ V+RS EAE++ MA AT + L + + L DN
Sbjct: 1304 LGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNL 1363
Query: 172 AALHMP-KI*FSMRAKHIEIDFHFL*DRRFYLDISTRFVNSNDQLTDVFTKSL 327
A ++ K F+ R KHIE+DFHF+ DR + R +++NDQ+ D FTK+L
Sbjct: 1364 GATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKAL 1416
>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
Length = 1012
Score = 67.4 bits (163), Expect = 9e-11
Identities = 44/116 (37%), Positives = 65/116 (55%), Gaps = 7/116 (6%)
Frame = +1
Query: 1 LSDNLISWKSKETIIVARSRAEAEFRVMATATCQSSLLPKPRDLVDVSLITHT*------ 162
L +NLISW +K+ V+RS EAE++ +A AT + + K L++ + H
Sbjct: 883 LGNNLISWTAKKQPTVSRSSTEAEYKALANATAEMIWVQK---LLNELGVRHPPRARLWC 939
Query: 163 DNKAALHMP-KI*FSMRAKHIEIDFHFL*DRRFYLDISTRFVNSNDQLTDVFTKSL 327
DN A ++ F R KHIEIDFHF+ +R + RF+++ DQL D FTK+L
Sbjct: 940 DNLGATYLSANPIFHARTKHIEIDFHFVRERVAQKLLEVRFISTGDQLADGFTKAL 995
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,616,638
Number of Sequences: 1393205
Number of extensions: 7952896
Number of successful extensions: 13448
Number of sequences better than 10.0: 329
Number of HSP's better than 10.0 without gapping: 13064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13212
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
