Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005616A_C01 KMC005616A_c01
(922 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187252.1| putative transcriptional regulator; protein id:... 231 e-117
ref|NP_197432.1| homeotic gene regulator - like protein; protein... 213 3e-54
ref|NP_565667.2| putative SNF2 subfamily transcription regulator... 150 1e-43
gb|AAD29835.2| putative SNF2 subfamily transcription regulator [... 150 1e-43
ref|NP_671894.1| putative SNF2 subfamily transcription regulator... 150 1e-43
>ref|NP_187252.1| putative transcriptional regulator; protein id: At3g06010.1
[Arabidopsis thaliana]
gi|6671969|gb|AAF23228.1|AC013454_15 putative
transcriptional regulator [Arabidopsis thaliana]
Length = 1132
Score = 231 bits (590), Expect(2) = e-117
Identities = 109/135 (80%), Positives = 126/135 (92%)
Frame = +1
Query: 517 DEDVD*IDSDDNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWML 696
D+D+D +SD+N D++DLLEGQRQYNSAIHSIQEKVTEQPS+L+GGELRSYQ+EGLQWM+
Sbjct: 386 DQDIDITESDNNDDSNDLLEGQRQYNSAIHSIQEKVTEQPSLLEGGELRSYQLEGLQWMV 445
Query: 697 SLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPHLIVAPKAVLPNWMNEFSTWA 876
SLFNNNLNGILADEMGLGKTIQTISLIA+L+E KGV GP+LIVAPKAVLPNW+NEF+TW
Sbjct: 446 SLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFATWV 505
Query: 877 PSIKTILYDGRMDER 921
PSI LYDGR++ER
Sbjct: 506 PSIAAFLYDGRLEER 520
Score = 212 bits (540), Expect(2) = e-117
Identities = 118/179 (65%), Positives = 133/179 (73%), Gaps = 17/179 (9%)
Frame = +3
Query: 6 PPATYGVGDRWPWMLMIKIRKKRDAE-----------------RLSR*EEQTKNHIETRK 134
P YGVGD + + RKKRDAE RLSR EE+ KN IET K
Sbjct: 196 PRPFYGVGDPFAMEADDQFRKKRDAELSIFVIGIADVLKVFVQRLSRLEEEEKNLIETAK 255
Query: 135 RRL*AEILNAVREFQLQIQASWKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKSDDQE 314
R+ AE+LNAVREFQLQIQA+ KRR+QRNDGVQAWHGRQRQRATRAEKLR ALKSDDQE
Sbjct: 256 RKFFAEVLNAVREFQLQIQATQKRRRQRNDGVQAWHGRQRQRATRAEKLRLMALKSDDQE 315
Query: 315 AYMRMVKESKNERLTLLLEETNKLLVN*GAAVQRQRDSKKSDGIEPLEDLEADLPESDA 491
AYM++VKESKNERLT LLEETNKLL N GAAVQRQ+D+K +GI+ L+D E+DL E DA
Sbjct: 316 AYMKLVKESKNERLTTLLEETNKLLANLGAAVQRQKDAKLPEGIDLLKDSESDLSELDA 374
>ref|NP_197432.1| homeotic gene regulator - like protein; protein id: At5g19310.1
[Arabidopsis thaliana]
Length = 1041
Score = 213 bits (542), Expect = 3e-54
Identities = 104/156 (66%), Positives = 130/156 (82%), Gaps = 4/156 (2%)
Frame = +1
Query: 466 KLIYRSQMP*KNKDSPLD----EDVD*IDSDDNGDTSDLLEGQRQYNSAIHSIQEKVTEQ 633
KL+ S+ + D+P D +D++ IDSD+N D++DLLEG+RQ+N AIHSIQEKVT+Q
Sbjct: 295 KLLKGSESDLSDVDAPEDVLPAQDIEIIDSDNNDDSNDLLEGERQFNLAIHSIQEKVTKQ 354
Query: 634 PSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGP 813
PS+LQGGELRSYQ+EGLQWM+SL+NN+ NGILADEMGLGKTIQTI+LIA+L+E K + GP
Sbjct: 355 PSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGP 414
Query: 814 HLIVAPKAVLPNWMNEFSTWAPSIKTILYDGRMDER 921
HLI+APKAVLPNW NEF+ WAPSI LYDG ++R
Sbjct: 415 HLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKR 450
Score = 156 bits (394), Expect = 5e-37
Identities = 88/162 (54%), Positives = 106/162 (65%)
Frame = +3
Query: 6 PPATYGVGDRWPWMLMIKIRKKRDAERLSR*EEQTKNHIETRKRRL*AEILNAVREFQLQ 185
P YGVGD + + R KRDAERL R EE+ KN IET +R+ AE+LNAVREFQLQ
Sbjct: 171 PRRMYGVGDSFVMEADDQFRNKRDAERLLRLEEEEKNLIETTQRKFFAEVLNAVREFQLQ 230
Query: 186 IQASWKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLL 365
IQAS +R KQRNDGVQAWHG+QRQRATRAEKLR ALKSDDQE YM++ KE
Sbjct: 231 IQASHRRCKQRNDGVQAWHGKQRQRATRAEKLRIMALKSDDQEEYMKLAKE--------- 281
Query: 366 LEETNKLLVN*GAAVQRQRDSKKSDGIEPLEDLEADLPESDA 491
+QRQ+D+K S+ + L+ E+DL + DA
Sbjct: 282 --------------IQRQKDAKLSENTKLLKGSESDLSDVDA 309
>ref|NP_565667.2| putative SNF2 subfamily transcription regulator; protein id:
At2g28290.1 [Arabidopsis thaliana]
Length = 3574
Score = 150 bits (378), Expect(2) = 1e-43
Identities = 74/143 (51%), Positives = 98/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 496 KNKDSPLDEDVD*IDSDDNGDTSD-LLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQ 672
+ + S +D I+++D D + LE +Y HSI+E + EQPS L GG+LR YQ
Sbjct: 699 ETRTSNATDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQ 758
Query: 673 IEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPHLIVAPKAVLPNW 852
+ GL+W++SL+NN+LNGILADEMGLGKT+Q ISLI +LME K GP L+V P +VLP W
Sbjct: 759 MNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGW 818
Query: 853 MNEFSTWAPSIKTILYDGRMDER 921
+E + WAPSI I+Y G DER
Sbjct: 819 QSEINFWAPSIHKIVYCGTPDER 841
Score = 49.3 bits (116), Expect(2) = 1e-43
Identities = 32/130 (24%), Positives = 69/130 (52%), Gaps = 8/130 (6%)
Frame = +3
Query: 57 KIRKKRDAERLSR*EEQTKNHIETRKRRL*AEILNAVREFQLQIQASWKRRKQRNDG--- 227
K + R ++L + E++ K + R R E + + +++ +K R++R G
Sbjct: 558 KHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNR 617
Query: 228 -VQAWHGRQ----RQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLV 392
+ +H R+ R++ + ++ + LK +D E Y+RMV+++K++R+ LL+ET K L
Sbjct: 618 YAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQ 677
Query: 393 N*GAAVQRQR 422
G+ ++ +
Sbjct: 678 KLGSKLKEAK 687
>gb|AAD29835.2| putative SNF2 subfamily transcription regulator [Arabidopsis
thaliana]
Length = 3571
Score = 150 bits (378), Expect(2) = 1e-43
Identities = 74/143 (51%), Positives = 98/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 496 KNKDSPLDEDVD*IDSDDNGDTSD-LLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQ 672
+ + S +D I+++D D + LE +Y HSI+E + EQPS L GG+LR YQ
Sbjct: 699 ETRTSNATDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQ 758
Query: 673 IEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPHLIVAPKAVLPNW 852
+ GL+W++SL+NN+LNGILADEMGLGKT+Q ISLI +LME K GP L+V P +VLP W
Sbjct: 759 MNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGW 818
Query: 853 MNEFSTWAPSIKTILYDGRMDER 921
+E + WAPSI I+Y G DER
Sbjct: 819 QSEINFWAPSIHKIVYCGTPDER 841
Score = 49.3 bits (116), Expect(2) = 1e-43
Identities = 32/130 (24%), Positives = 69/130 (52%), Gaps = 8/130 (6%)
Frame = +3
Query: 57 KIRKKRDAERLSR*EEQTKNHIETRKRRL*AEILNAVREFQLQIQASWKRRKQRNDG--- 227
K + R ++L + E++ K + R R E + + +++ +K R++R G
Sbjct: 558 KHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNR 617
Query: 228 -VQAWHGRQ----RQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLV 392
+ +H R+ R++ + ++ + LK +D E Y+RMV+++K++R+ LL+ET K L
Sbjct: 618 YAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQ 677
Query: 393 N*GAAVQRQR 422
G+ ++ +
Sbjct: 678 KLGSKLKEAK 687
>ref|NP_671894.1| putative SNF2 subfamily transcription regulator; protein id:
At2g28290.2 [Arabidopsis thaliana]
Length = 3529
Score = 150 bits (378), Expect(2) = 1e-43
Identities = 74/143 (51%), Positives = 98/143 (67%), Gaps = 1/143 (0%)
Frame = +1
Query: 496 KNKDSPLDEDVD*IDSDDNGDTSD-LLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQ 672
+ + S +D I+++D D + LE +Y HSI+E + EQPS L GG+LR YQ
Sbjct: 699 ETRTSNATDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQ 758
Query: 673 IEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPHLIVAPKAVLPNW 852
+ GL+W++SL+NN+LNGILADEMGLGKT+Q ISLI +LME K GP L+V P +VLP W
Sbjct: 759 MNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGW 818
Query: 853 MNEFSTWAPSIKTILYDGRMDER 921
+E + WAPSI I+Y G DER
Sbjct: 819 QSEINFWAPSIHKIVYCGTPDER 841
Score = 49.3 bits (116), Expect(2) = 1e-43
Identities = 32/130 (24%), Positives = 69/130 (52%), Gaps = 8/130 (6%)
Frame = +3
Query: 57 KIRKKRDAERLSR*EEQTKNHIETRKRRL*AEILNAVREFQLQIQASWKRRKQRNDG--- 227
K + R ++L + E++ K + R R E + + +++ +K R++R G
Sbjct: 558 KHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNR 617
Query: 228 -VQAWHGRQ----RQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLV 392
+ +H R+ R++ + ++ + LK +D E Y+RMV+++K++R+ LL+ET K L
Sbjct: 618 YAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQ 677
Query: 393 N*GAAVQRQR 422
G+ ++ +
Sbjct: 678 KLGSKLKEAK 687
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 800,875,510
Number of Sequences: 1393205
Number of extensions: 17276886
Number of successful extensions: 58872
Number of sequences better than 10.0: 668
Number of HSP's better than 10.0 without gapping: 53770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58504
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 50750480856
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
