Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005615A_C01 KMC005615A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC67491.1| selenium binding protein [Lotus japonicus] gi|15... 273 8e-73
emb|CAC67501.1| selenium binding protein [Medicago sativa] 253 1e-66
emb|CAC67472.1| selenium binding protein [Glycine max] 243 2e-63
gb|AAM19706.1|AF499719_1 putative selenium-binding protein [Thel... 240 8e-63
ref|NP_193139.1| selenium-binding protein like; protein id: At4g... 239 2e-62
>emb|CAC67491.1| selenium binding protein [Lotus japonicus]
gi|15485718|emb|CAC67492.1| selenium binding protein
[Lotus japonicus]
Length = 487
Score = 273 bits (699), Expect = 8e-73
Identities = 129/130 (99%), Positives = 130/130 (99%)
Frame = -2
Query: 563 PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLSLDGKRLYVT 384
PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQL+LDGKRLYVT
Sbjct: 358 PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLTLDGKRLYVT 417
Query: 383 NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP 204
NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP
Sbjct: 418 NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP 477
Query: 203 GGDCTSDIWI 174
GGDCTSDIWI
Sbjct: 478 GGDCTSDIWI 487
>emb|CAC67501.1| selenium binding protein [Medicago sativa]
Length = 488
Score = 253 bits (645), Expect = 1e-66
Identities = 117/130 (90%), Positives = 124/130 (95%)
Frame = -2
Query: 563 PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLSLDGKRLYVT 384
P LTGQ+W GGLIQKGSPV A+ +DG+TWQSDVPEIQG+KLRGGPQMIQLSLDGKRLYVT
Sbjct: 359 PKLTGQVWAGGLIQKGSPVVAVKDDGETWQSDVPEIQGKKLRGGPQMIQLSLDGKRLYVT 418
Query: 383 NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP 204
NSLFSAWDKQFYP LVE+GSHILQIDVDTE GGLKINPNFFVDFGAEPDGP+LAHEMRYP
Sbjct: 419 NSLFSAWDKQFYPKLVEQGSHILQIDVDTENGGLKINPNFFVDFGAEPDGPSLAHEMRYP 478
Query: 203 GGDCTSDIWI 174
GGDCTSDIWI
Sbjct: 479 GGDCTSDIWI 488
>emb|CAC67472.1| selenium binding protein [Glycine max]
Length = 478
Score = 243 bits (619), Expect = 2e-63
Identities = 113/130 (86%), Positives = 118/130 (89%)
Frame = -2
Query: 563 PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLSLDGKRLYVT 384
PVLTGQ+WVG QKGSP+ AI EDG TWQSDVP+IQG KL GPQMIQLSLDGKR+YVT
Sbjct: 349 PVLTGQVWVGDYFQKGSPIVAITEDGNTWQSDVPDIQGNKLSAGPQMIQLSLDGKRVYVT 408
Query: 383 NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP 204
NSLFSAWDKQFYP LVEKGSH+LQIDVDTE GGLKINPNFFVDFGAEP GPALAHEMRYP
Sbjct: 409 NSLFSAWDKQFYPELVEKGSHMLQIDVDTENGGLKINPNFFVDFGAEPGGPALAHEMRYP 468
Query: 203 GGDCTSDIWI 174
GGDCTSDIWI
Sbjct: 469 GGDCTSDIWI 478
>gb|AAM19706.1|AF499719_1 putative selenium-binding protein [Thellungiella halophila]
Length = 409
Score = 240 bits (613), Expect = 8e-63
Identities = 109/130 (83%), Positives = 122/130 (93%)
Frame = -2
Query: 563 PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLSLDGKRLYVT 384
PVLTGQ+WVGGL+QKGSPV A+GEDG ++Q DVP+I+G+ LRGGPQMIQLSLDGKRLY T
Sbjct: 280 PVLTGQIWVGGLLQKGSPVKAVGEDGNSFQFDVPQIKGKSLRGGPQMIQLSLDGKRLYAT 339
Query: 383 NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP 204
NSLFSAWD+QFYP L++KGSHI+QIDVDTEKGGL INPNFFVDFG EP+GPALAHEMRYP
Sbjct: 340 NSLFSAWDRQFYPELMDKGSHIIQIDVDTEKGGLSINPNFFVDFGDEPEGPALAHEMRYP 399
Query: 203 GGDCTSDIWI 174
GGDCTSDIWI
Sbjct: 400 GGDCTSDIWI 409
>ref|NP_193139.1| selenium-binding protein like; protein id: At4g14030.1, supported
by cDNA: gi_17065115 [Arabidopsis thaliana]
gi|6094242|sp|O23264|SBP_ARATH Putative selenium-binding
protein gi|7488183|pir||D71401 probable selenium-binding
protein - Arabidopsis thaliana
gi|2244759|emb|CAB10182.1| selenium-binding protein like
[Arabidopsis thaliana] gi|7268107|emb|CAB78445.1|
selenium-binding protein like [Arabidopsis thaliana]
gi|17065116|gb|AAL32712.1| selenium-binding protein
[Arabidopsis thaliana] gi|22136098|gb|AAM91127.1|
selenium-binding protein [Arabidopsis thaliana]
Length = 490
Score = 239 bits (609), Expect = 2e-62
Identities = 108/130 (83%), Positives = 122/130 (93%)
Frame = -2
Query: 563 PVLTGQLWVGGLIQKGSPVAAIGEDGKTWQSDVPEIQGQKLRGGPQMIQLSLDGKRLYVT 384
PVLTGQ+WVGGL+QKGSPV A+GEDG T+Q +VP+I+G+ LRGGPQMIQLSLDGKRLY T
Sbjct: 361 PVLTGQIWVGGLLQKGSPVKAVGEDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYAT 420
Query: 383 NSLFSAWDKQFYPGLVEKGSHILQIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYP 204
NSLFSAWD+QFYP ++EKGSHI+QIDVDTEKGGL INP+FFVDFG EPDGP+LAHEMRYP
Sbjct: 421 NSLFSAWDRQFYPEIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYP 480
Query: 203 GGDCTSDIWI 174
GGDCTSDIWI
Sbjct: 481 GGDCTSDIWI 490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,016,624
Number of Sequences: 1393205
Number of extensions: 11115791
Number of successful extensions: 27115
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 26138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27069
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
