Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005612A_C01 KMC005612A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB40834.1| pyrroline-5-carboxylate synthetase [Vitis vinifera] 34 1.5
ref|XP_227624.1| similar to hypothetical protein FLJ11535 [Homo ... 33 2.6
ref|XP_131170.3| similar to hypothetical protein FLJ11535 [Homo ... 33 2.6
dbj|BAC37711.1| unnamed protein product [Mus musculus] 33 2.6
ref|NP_437045.1| putative transcriptional regulator protein [Sin... 33 2.6
>emb|CAB40834.1| pyrroline-5-carboxylate synthetase [Vitis vinifera]
Length = 762
Score = 33.9 bits (76), Expect = 1.5
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = -1
Query: 256 LSKLESDANSRASSLANIYRTWLTKLGSQPGKMAFSMVNS--QFLNVLWDLGHLSKKCTL 83
L K+E+DA+ A+ LA ++ +++L +PGK++ S+ NS N+ +GH+ KK +
Sbjct: 336 LIKIENDADVEAAQLAGYEKSLVSRLVLKPGKIS-SLANSIRVLANMERPIGHVLKKTEV 394
Query: 82 EFDFLVETTS 53
++E S
Sbjct: 395 ADGLILEKMS 404
>ref|XP_227624.1| similar to hypothetical protein FLJ11535 [Homo sapiens] [Rattus
norvegicus]
Length = 756
Score = 33.1 bits (74), Expect = 2.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 4 QPIIVIPDSNKASSGGYW-WFQPKNQTLKCTSYLDDLN 114
+PII IP S + G W W P+ +L+ T L+DLN
Sbjct: 623 RPIIQIPSSTEGEGSGSWKWKAPEKSSLRQTYELNDLN 660
>ref|XP_131170.3| similar to hypothetical protein FLJ11535 [Homo sapiens] [Mus
musculus]
Length = 717
Score = 33.1 bits (74), Expect = 2.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 4 QPIIVIPDSNKASSGGYW-WFQPKNQTLKCTSYLDDLN 114
+PII IP S + G W W P+ +L+ T L+DLN
Sbjct: 584 RPIIQIPSSTEGEGSGSWKWKAPEKSSLRQTYELNDLN 621
>dbj|BAC37711.1| unnamed protein product [Mus musculus]
Length = 717
Score = 33.1 bits (74), Expect = 2.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 4 QPIIVIPDSNKASSGGYW-WFQPKNQTLKCTSYLDDLN 114
+PII IP S + G W W P+ +L+ T L+DLN
Sbjct: 584 RPIIQIPSSTEGEGSGSWKWEAPEKSSLRQTYELNDLN 621
>ref|NP_437045.1| putative transcriptional regulator protein [Sinorhizobium meliloti]
gi|25501811|pir||A95905 probable transcription regulator
protein [imported] - Sinorhizobium meliloti (strain
1021) magaplasmid pSymB gi|15140378|emb|CAC48905.1|
putative transcriptional regulator protein
[Sinorhizobium meliloti]
Length = 202
Score = 33.1 bits (74), Expect = 2.6
Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 346 LFFVNIIVVIIFSLFFFPGPIVLAPVSLCP-LSKLESDANSRASSLANIYRTWLTKLGSQ 170
L FV++++V + F P+ +LC L+KL+ A RA+ + +YR WL K S+
Sbjct: 83 LLFVHMLIVNRAQIMDFGCPVG----TLCSELAKLDHTAQGRATEIFGLYRDWLAKQISE 138
Query: 169 PG 164
G
Sbjct: 139 LG 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,683,006
Number of Sequences: 1393205
Number of extensions: 10439162
Number of successful extensions: 24894
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24879
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
