Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005611A_C01 KMC005611A_c01
(671 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43681|NLTP_VIGUN Probable nonspecific lipid-transfer protein... 123 2e-27
dbj|BAC23052.1| putative lipid transfer protein [Solanum tuberosum] 122 6e-27
ref|NP_188456.1| lipid transfer protein, putative; protein id: A... 120 2e-26
ref|NP_564532.1| lipid transfer protein, putative; protein id: A... 113 3e-24
sp|P82353|NLT2_PRUAR Nonspecific lipid-transfer protein 2 (LTP 2) 112 3e-24
>sp|Q43681|NLTP_VIGUN Probable nonspecific lipid-transfer protein AKCS9 precursor (LTP)
gi|629658|pir||S47084 lipid transfer like protein -
cowpea gi|499034|emb|CAA56113.1| lipid transfer like
protein [Vigna unguiculata]
Length = 99
Score = 123 bits (309), Expect = 2e-27
Identities = 55/103 (53%), Positives = 73/103 (70%)
Frame = +2
Query: 32 MMMKKEIKVSASSVALCAVVVVVLLMAEAAPIAEAVTCSPVALSPCLGAISSSTPPSAAC 211
M MK ++K+S +CAVVVV L + + P+AEAVTC+P LS C+ AI+ + PS+ C
Sbjct: 1 MTMKMKMKMSV----VCAVVVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTC 56
Query: 212 CQKLREQKPCLCGYLRNPSLAPYVNSPGARAVASTCGIPYPRC 340
C KL+ Q+PCLC Y++NPSL YVNSPGA+ V S CG+ YP C
Sbjct: 57 CSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99
>dbj|BAC23052.1| putative lipid transfer protein [Solanum tuberosum]
Length = 93
Score = 122 bits (305), Expect = 6e-27
Identities = 53/86 (61%), Positives = 69/86 (79%)
Frame = +2
Query: 83 AVVVVVLLMAEAAPIAEAVTCSPVALSPCLGAISSSTPPSAACCQKLREQKPCLCGYLRN 262
AV+ V++L+ A I+ AVTCS + LSPCLGAI+S++ PS CC ++REQKPCLC YL+N
Sbjct: 8 AVLTVLVLLLVEAHISVAVTCSAIQLSPCLGAITSNSAPSTLCCSRIREQKPCLCTYLKN 67
Query: 263 PSLAPYVNSPGARAVASTCGIPYPRC 340
P+L YVNSPGA+ VA TCG+PYP+C
Sbjct: 68 PTLRNYVNSPGAKKVARTCGVPYPKC 93
>ref|NP_188456.1| lipid transfer protein, putative; protein id: At3g18280.1,
supported by cDNA: gi_14532557 [Arabidopsis thaliana]
gi|9279661|dbj|BAB01177.1| lipid transfer protein
[Arabidopsis thaliana] gi|14532558|gb|AAK64007.1|
AT3g18280/MIE15_7 [Arabidopsis thaliana]
gi|18655405|gb|AAL76158.1| AT3g18280/MIE15_7
[Arabidopsis thaliana]
Length = 96
Score = 120 bits (300), Expect = 2e-26
Identities = 54/97 (55%), Positives = 74/97 (75%)
Frame = +2
Query: 50 IKVSASSVALCAVVVVVLLMAEAAPIAEAVTCSPVALSPCLGAISSSTPPSAACCQKLRE 229
+ + + V+L A+ V+L++ AP AEAVTCSP+ LSPC AI+SS+PPSA CC KL+E
Sbjct: 2 VMIKTTMVSLFALAAVLLMIL--APAAEAVTCSPMQLSPCATAITSSSPPSALCCAKLKE 59
Query: 230 QKPCLCGYLRNPSLAPYVNSPGARAVASTCGIPYPRC 340
Q+PCLCGY+RNPSL +V++P AR V+ +C +P PRC
Sbjct: 60 QRPCLCGYMRNPSLRRFVSTPNARKVSKSCKLPIPRC 96
>ref|NP_564532.1| lipid transfer protein, putative; protein id: At1g48750.1,
supported by cDNA: gi_15028044, supported by cDNA:
gi_20258874 [Arabidopsis thaliana]
gi|15028045|gb|AAK76553.1| putative lipid transfer
protein [Arabidopsis thaliana]
gi|20258875|gb|AAM14109.1| putative lipid transfer
protein [Arabidopsis thaliana]
Length = 94
Score = 113 bits (282), Expect = 3e-24
Identities = 50/90 (55%), Positives = 68/90 (75%)
Frame = +2
Query: 71 VALCAVVVVVLLMAEAAPIAEAVTCSPVALSPCLGAISSSTPPSAACCQKLREQKPCLCG 250
V++ A+ +LL+ P+AE VTCSP+ L+ C A++SS+PPS ACC KLREQ+PCLCG
Sbjct: 7 VSVLALAAAILLLT--VPVAEGVTCSPMQLASCAAAMTSSSPPSEACCTKLREQQPCLCG 64
Query: 251 YLRNPSLAPYVNSPGARAVASTCGIPYPRC 340
Y+RNP+L YV+SP AR V+++C IP P C
Sbjct: 65 YMRNPTLRQYVSSPNARKVSNSCKIPSPSC 94
>sp|P82353|NLT2_PRUAR Nonspecific lipid-transfer protein 2 (LTP 2)
Length = 68
Score = 112 bits (281), Expect = 3e-24
Identities = 48/68 (70%), Positives = 54/68 (78%)
Frame = +2
Query: 137 VTCSPVALSPCLGAISSSTPPSAACCQKLREQKPCLCGYLRNPSLAPYVNSPGARAVAST 316
VTCSPV LSPCLG I+S P CCQKLREQ+PCLCGYL+NPSL YVNSP AR +AS
Sbjct: 1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASN 60
Query: 317 CGIPYPRC 340
CG+P P+C
Sbjct: 61 CGVPVPQC 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,259,411
Number of Sequences: 1393205
Number of extensions: 13842519
Number of successful extensions: 56070
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 43778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53535
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
