Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005610A_C01 KMC005610A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB96077.1| alpha-glucosidase [Solanum tuberosum subsp. tube... 144 1e-33
emb|CAA10382.2| alpha-D-xylosidase [Tropaeolum majus] 138 7e-32
ref|NP_177023.1| glycosyl hydrolase family 31 (alpha-xylosidase)... 134 1e-30
gb|AAD05539.1| alpha-xylosidase precursor [Arabidopsis thaliana] 134 1e-30
ref|NP_190180.1| glycosyl hydrolase family 31; protein id: At3g4... 123 2e-27
>emb|CAB96077.1| alpha-glucosidase [Solanum tuberosum subsp. tuberosum]
Length = 928
Score = 144 bits (363), Expect = 1e-33
Identities = 68/128 (53%), Positives = 90/128 (70%), Gaps = 4/128 (3%)
Frame = -2
Query: 643 KGNLFLDDDELPEMKLGNGYSTYIDLHAAVKQGGVRVWSEVQEGKFALDQGWVIESISVL 464
KGNLFLDDDELPEMKLGNG STY+D HA G V++WSEVQE K+ALD+GW IE ++VL
Sbjct: 800 KGNLFLDDDELPEMKLGNGKSTYMDFHATTSNGTVKIWSEVQESKYALDKGWYIEKVTVL 859
Query: 463 GLGGSGAVHALEINGMPVSD---VKVSTSEHKHLDG-QANGESKTGMVALKNLNIPLGEN 296
GL G G + ++G V D ++ T EHK +D + G K+ M+ +K L +P+G+N
Sbjct: 860 GLNGIGGAFDILVDGSKVEDTSKLEFETEEHKFIDKLEEGGHKKSMMLDIKGLELPIGKN 919
Query: 295 FALTWNMG 272
FA++W MG
Sbjct: 920 FAMSWKMG 927
>emb|CAA10382.2| alpha-D-xylosidase [Tropaeolum majus]
Length = 935
Score = 138 bits (347), Expect = 7e-32
Identities = 73/129 (56%), Positives = 94/129 (72%), Gaps = 5/129 (3%)
Frame = -2
Query: 643 KGNLFLDDDELPEMKLGNGYSTYIDLHAAVKQGGVRVWSEVQEGKFALDQGWVIESISVL 464
KGNLFLD DELPEMKLGNGYSTY++ +A + QG V+VWS+VQEGKFALD GW IE ++VL
Sbjct: 807 KGNLFLDKDELPEMKLGNGYSTYVEFYATLNQGAVKVWSQVQEGKFALDNGWSIEKVTVL 866
Query: 463 GLGGSGAVHALEINGMPV---SDVKVSTSEHKHLDGQANGESK--TGMVALKNLNIPLGE 299
GL V +LEI+G PV S V++S+SE + ESK + MV +K L+IP+G+
Sbjct: 867 GLSNK-QVGSLEIDGSPVSGISKVEMSSSEQIFVGKLDAEESKPESLMVEVKGLDIPVGK 925
Query: 298 NFALTWNMG 272
NF ++W MG
Sbjct: 926 NFVMSWKMG 934
>ref|NP_177023.1| glycosyl hydrolase family 31 (alpha-xylosidase); protein id:
At1g68560.1, supported by cDNA: gi_15982750 [Arabidopsis
thaliana] gi|25404752|pir||H96709 hypothetical protein
F24J5.20 [imported] - Arabidopsis thaliana
gi|5002212|gb|AAD37363.1|AF144078_1 alpha-xylosidase
precursor [Arabidopsis thaliana]
gi|5734722|gb|AAD49987.1|AC008075_20 Identical to
gb|AF144078 alpha-xylosidase precursor from Arabidopsis
thaliana. ESTs gb|W43892, gb|N96165, gb|T46694,
gb|N37141, gb|R64965, gb|R90271, gb|AA651443,
gb|AA712305, gb|T04189 and gb|AA597852 come from this
gene gi|15982751|gb|AAL09716.1| At1g68560/F24J5_10
[Arabidopsis thaliana] gi|27363344|gb|AAO11591.1|
At1g68560/F24J5_10 [Arabidopsis thaliana]
Length = 915
Score = 134 bits (337), Expect = 1e-30
Identities = 63/125 (50%), Positives = 96/125 (76%), Gaps = 2/125 (1%)
Frame = -2
Query: 640 GNLFLDDDELPEMKLGNGYSTYIDLHAAVKQGGVRVWSEVQEGKFALDQGWVIESISVLG 461
G L+LD+DELPEMKLGNG STY+D +A+V G +++WS+V+EGKFAL +GWVIE +SVLG
Sbjct: 789 GKLYLDEDELPEMKLGNGQSTYVDFYASVGNGTMKMWSQVKEGKFALSKGWVIEKVSVLG 848
Query: 460 LGGSGAVHALEINGMPVS-DVKVSTSEHKHLDG-QANGESKTGMVALKNLNIPLGENFAL 287
L G+G V ++ING P++ ++VS+ EH ++ G + E+K+ MV ++ L + +G++F +
Sbjct: 849 LRGAGQVSEIQINGSPMTKKIEVSSKEHTYVIGLEDEEENKSVMVEVRGLEMLVGKDFNM 908
Query: 286 TWNMG 272
+W MG
Sbjct: 909 SWKMG 913
>gb|AAD05539.1| alpha-xylosidase precursor [Arabidopsis thaliana]
Length = 907
Score = 134 bits (337), Expect = 1e-30
Identities = 63/125 (50%), Positives = 96/125 (76%), Gaps = 2/125 (1%)
Frame = -2
Query: 640 GNLFLDDDELPEMKLGNGYSTYIDLHAAVKQGGVRVWSEVQEGKFALDQGWVIESISVLG 461
G L+LD+DELPEMKLGNG STY+D +A+V G +++WS+V+EGKFAL +GWVIE +SVLG
Sbjct: 781 GKLYLDEDELPEMKLGNGQSTYVDFYASVGNGTMKMWSQVKEGKFALSKGWVIEKVSVLG 840
Query: 460 LGGSGAVHALEINGMPVS-DVKVSTSEHKHLDG-QANGESKTGMVALKNLNIPLGENFAL 287
L G+G V ++ING P++ ++VS+ EH ++ G + E+K+ MV ++ L + +G++F +
Sbjct: 841 LRGAGQVSEIQINGSPMTKKIEVSSKEHTYVIGLEDEEENKSVMVEVRGLEMLVGKDFNM 900
Query: 286 TWNMG 272
+W MG
Sbjct: 901 SWKMG 905
>ref|NP_190180.1| glycosyl hydrolase family 31; protein id: At3g45940.1 [Arabidopsis
thaliana]
Length = 868
Score = 123 bits (308), Expect = 2e-27
Identities = 64/127 (50%), Positives = 90/127 (70%), Gaps = 5/127 (3%)
Frame = -2
Query: 640 GNLFLDDDELPEMKLGNGYSTYIDLHAAVKQGGVRVWSEVQEGKFALDQGWVIESISVLG 461
G LFLDDDELPEMKLGNG STYID +A+V V++WS+V+EG+FAL QG VIE + VLG
Sbjct: 726 GKLFLDDDELPEMKLGNGKSTYIDFYASVGNESVKIWSQVKEGQFALSQGLVIEKVIVLG 785
Query: 460 LGGSGAVHALEINGMPVSD----VKVSTSEHKHLDG-QANGESKTGMVALKNLNIPLGEN 296
L G+ V + +NG +S+ ++VS+ E ++ G + GESK+ MV LK L + +G++
Sbjct: 786 LKGTWKVSEILLNGSSISNETKTIEVSSKEQMYVVGSEDEGESKSFMVELKGLEMLVGKD 845
Query: 295 FALTWNM 275
F ++W M
Sbjct: 846 FNISWKM 852
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,079,117
Number of Sequences: 1393205
Number of extensions: 12980134
Number of successful extensions: 30886
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30861
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
