Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005609A_C01 KMC005609A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06789 hydroxyproline-rich glycoprotein 1 - garden pea (fra... 232 4e-60
sp|P55844|RL14_PEA PROBABLE 60 RIBOSOMAL PROTEIN L14 (HYDROXYPRO... 232 4e-60
dbj|BAA83469.1| Csf-1 [Cucumis sativus] 228 4e-59
ref|NP_179635.1| 60S ribosomal protein L14; protein id: At2g2045... 224 1e-57
ref|NP_194439.1| ribosomal protein L14 -like protein; protein id... 219 3e-56
>pir||T06789 hydroxyproline-rich glycoprotein 1 - garden pea (fragment)
gi|1711036|gb|AAB97098.1| hydroxyproline rich
glycoprotein PsHRGP1 [Pisum sativum]
Length = 264
Score = 232 bits (591), Expect = 4e-60
Identities = 115/133 (86%), Positives = 124/133 (92%)
Frame = -1
Query: 653 MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 474
MPFKRFVE+GRVAL+NYGKDYGRLVVIVD+IDQ RAL+DAPDMERS +N KRLSLTD+KI
Sbjct: 132 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKI 191
Query: 473 DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 294
DIKRVPKKKDLI A+EAADVKNKW KSSWGRKLIV+K RA+LNDFDRFKIMLAKIKRA
Sbjct: 192 DIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAG 251
Query: 293 VRTELAKLKKTAA 255
VR ELAKLKKTAA
Sbjct: 252 VRQELAKLKKTAA 264
>sp|P55844|RL14_PEA PROBABLE 60 RIBOSOMAL PROTEIN L14 (HYDROXYPROLINE RICH GLYCOPROTEIN
HRGP1)
Length = 133
Score = 232 bits (591), Expect = 4e-60
Identities = 115/133 (86%), Positives = 124/133 (92%)
Frame = -1
Query: 653 MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 474
MPFKRFVE+GRVAL+NYGKDYGRLVVIVD+IDQ RAL+DAPDMERS +N KRLSLTD+KI
Sbjct: 1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKI 60
Query: 473 DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 294
DIKRVPKKKDLI A+EAADVKNKW KSSWGRKLIV+K RA+LNDFDRFKIMLAKIKRA
Sbjct: 61 DIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAG 120
Query: 293 VRTELAKLKKTAA 255
VR ELAKLKKTAA
Sbjct: 121 VRQELAKLKKTAA 133
>dbj|BAA83469.1| Csf-1 [Cucumis sativus]
Length = 138
Score = 228 bits (582), Expect = 4e-59
Identities = 111/133 (83%), Positives = 124/133 (92%)
Frame = -1
Query: 653 MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 474
MPFKR+VE+GR+AL+NYG+DYG+LVVIVD+IDQNRAL+DAPDMERSQMN KRLSLTDIKI
Sbjct: 6 MPFKRYVEIGRIALINYGEDYGKLVVIVDVIDQNRALVDAPDMERSQMNFKRLSLTDIKI 65
Query: 473 DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 294
DIKRVPKKK+LI AM+A DV+ KWE SSWGRKLIV+KRRASLNDFDRFK+MLAKIKRAG
Sbjct: 66 DIKRVPKKKELIEAMKAGDVQKKWENSSWGRKLIVKKRRASLNDFDRFKLMLAKIKRAGL 125
Query: 293 VRTELAKLKKTAA 255
VR ELAKLKK A
Sbjct: 126 VRQELAKLKKAEA 138
>ref|NP_179635.1| 60S ribosomal protein L14; protein id: At2g20450.1, supported by
cDNA: 15198., supported by cDNA: gi_20465570
[Arabidopsis thaliana] gi|25309199|pir||D84589 60S
ribosomal protein L14 [imported] - Arabidopsis thaliana
gi|4586027|gb|AAD25645.1| 60S ribosomal protein L14
[Arabidopsis thaliana] gi|17529166|gb|AAL38809.1|
putative 60S ribosomal protein L14 [Arabidopsis
thaliana] gi|20465571|gb|AAM20268.1| putative 60S
ribosomal protein L14 [Arabidopsis thaliana]
gi|21553580|gb|AAM62673.1| 60S ribosomal protein L14
[Arabidopsis thaliana]
Length = 134
Score = 224 bits (570), Expect = 1e-57
Identities = 113/133 (84%), Positives = 122/133 (90%)
Frame = -1
Query: 653 MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 474
M FKRFVE+GRVALVNYG+DYG+LVVIVD++DQNRAL+DAPDMER QMNLKRLSLTDI I
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60
Query: 473 DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 294
DI RVPKKK LI AME ADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIKRAG
Sbjct: 61 DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120
Query: 293 VRTELAKLKKTAA 255
VR ELAKLK+ A
Sbjct: 121 VRQELAKLKREIA 133
>ref|NP_194439.1| ribosomal protein L14 -like protein; protein id: At4g27090.1,
supported by cDNA: gi_14190382, supported by cDNA:
gi_15215884 [Arabidopsis thaliana]
gi|7488307|pir||T06039 ribosomal protein L14 homolog
T24A18.40 - Arabidopsis thaliana
gi|4490705|emb|CAB38839.1| ribosomal protein L14-like
protein [Arabidopsis thaliana]
gi|7269562|emb|CAB79564.1| ribosomal protein L14-like
protein [Arabidopsis thaliana]
gi|14190383|gb|AAK55672.1|AF378869_1 AT4g27090/T24A18_40
[Arabidopsis thaliana] gi|15215885|gb|AAK91486.1|
AT4g27090/T24A18_40 [Arabidopsis thaliana]
Length = 134
Score = 219 bits (558), Expect = 3e-56
Identities = 109/130 (83%), Positives = 120/130 (91%)
Frame = -1
Query: 653 MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 474
M FKR+VE+GRVALVNYG+D+G+LVVIVD++DQNRAL+DAPDMER QMN KRLSLTDI I
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60
Query: 473 DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 294
DI RVPKKK LI AME ADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIK+AG
Sbjct: 61 DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120
Query: 293 VRTELAKLKK 264
VR ELAKLKK
Sbjct: 121 VRQELAKLKK 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,815,321
Number of Sequences: 1393205
Number of extensions: 12267548
Number of successful extensions: 33872
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 32299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33802
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
