Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005608A_C01 KMC005608A_c01
(736 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13589.1|AC051633_5 putative ubiquitin protein [Oryza sativa] 119 3e-26
gb|AAM22708.1|AC098693_13 Putative ubiquitin protein [Oryza sati... 118 1e-25
gb|AAK59681.1| putative ubiquitin protein [Arabidopsis thaliana] 114 1e-24
ref|NP_179311.1| putative ubiquitin-like protein; protein id: At... 114 1e-24
ref|NP_565407.1| putative ubiquitin-like protein; protein id: At... 110 2e-23
>gb|AAG13589.1|AC051633_5 putative ubiquitin protein [Oryza sativa]
Length = 575
Score = 119 bits (299), Expect = 3e-26
Identities = 61/97 (62%), Positives = 72/97 (73%), Gaps = 1/97 (1%)
Frame = -3
Query: 734 QLGQQQPTQESGQTGGGTGPLNNLGLEMLSSMFGGLGAGS-LAVPNRSNEAPEQLYATQL 558
QLGQ QP Q+ Q G TG N+ L+ L M GLGAG + VPN SN PE+LYATQL
Sbjct: 478 QLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQL 537
Query: 557 SQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSG 447
+QL+EMGF DT ENI+AL+AT+GNV+AAVERLLGN G
Sbjct: 538 TQLREMGFIDTAENIQALVATAGNVNAAVERLLGNLG 574
>gb|AAM22708.1|AC098693_13 Putative ubiquitin protein [Oryza sativa (japonica cultivar-group)]
Length = 548
Score = 118 bits (295), Expect = 1e-25
Identities = 68/108 (62%), Positives = 73/108 (66%), Gaps = 12/108 (11%)
Frame = -3
Query: 734 QLGQQQPTQESGQTGGGTGPLN-----------NLGLEMLSSMFGGLGAGS-LAVPNRSN 591
QLGQQQ E Q+G G N N L L SMF GLGAG L VP+ N
Sbjct: 441 QLGQQQAGPERTQSGAGAEYFNGTTYESTLMPGNTNLNNLMSMFSGLGAGGGLGVPSAPN 500
Query: 590 EAPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSG 447
PE+LYATQL+QLQEMGFFDTQENIRALIAT+GNVHAAVERLLGN G
Sbjct: 501 VPPEELYATQLAQLQEMGFFDTQENIRALIATAGNVHAAVERLLGNIG 548
>gb|AAK59681.1| putative ubiquitin protein [Arabidopsis thaliana]
Length = 551
Score = 114 bits (285), Expect = 1e-24
Identities = 58/89 (65%), Positives = 72/89 (80%)
Frame = -3
Query: 713 TQESGQTGGGTGPLNNLGLEMLSSMFGGLGAGSLAVPNRSNEAPEQLYATQLSQLQEMGF 534
+Q++GQTG TG NN GL++L +MFG LGAG L+ N+SN PE+ YATQL QLQEMGF
Sbjct: 464 SQDAGQTGAATG--NNGGLDLLMNMFGSLGAGGLSGTNQSNVPPEERYATQLQQLQEMGF 521
Query: 533 FDTQENIRALIATSGNVHAAVERLLGNSG 447
+D ENIRAL+AT+GNV+AAVERLLG+ G
Sbjct: 522 YDRAENIRALLATNGNVNAAVERLLGSIG 550
>ref|NP_179311.1| putative ubiquitin-like protein; protein id: At2g17200.1, supported
by cDNA: gi_14334545 [Arabidopsis thaliana]
gi|25411787|pir||C84549 probable ubiquitin-like protein
[imported] - Arabidopsis thaliana
gi|4584343|gb|AAD25138.1| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|23296306|gb|AAN13037.1| putative ubiquitin protein
[Arabidopsis thaliana]
Length = 551
Score = 114 bits (285), Expect = 1e-24
Identities = 58/89 (65%), Positives = 72/89 (80%)
Frame = -3
Query: 713 TQESGQTGGGTGPLNNLGLEMLSSMFGGLGAGSLAVPNRSNEAPEQLYATQLSQLQEMGF 534
+Q++GQTG TG NN GL++L +MFG LGAG L+ N+SN PE+ YATQL QLQEMGF
Sbjct: 464 SQDAGQTGAATG--NNGGLDLLMNMFGSLGAGGLSGTNQSNVPPEERYATQLQQLQEMGF 521
Query: 533 FDTQENIRALIATSGNVHAAVERLLGNSG 447
+D ENIRAL+AT+GNV+AAVERLLG+ G
Sbjct: 522 YDRAENIRALLATNGNVNAAVERLLGSIG 550
>ref|NP_565407.1| putative ubiquitin-like protein; protein id: At2g17190.1, supported
by cDNA: gi_13430493, supported by cDNA: gi_14596080,
supported by cDNA: gi_20148242, supported by cDNA:
gi_21280930 [Arabidopsis thaliana]
gi|13430494|gb|AAK25869.1|AF360159_1 putative ubiquitin
protein [Arabidopsis thaliana]
gi|14596081|gb|AAK68768.1| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|20148243|gb|AAM10012.1| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|20198103|gb|AAD25137.2| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|21280931|gb|AAM44934.1| putative ubiquitin protein
[Arabidopsis thaliana]
Length = 538
Score = 110 bits (276), Expect = 2e-23
Identities = 55/88 (62%), Positives = 68/88 (76%)
Frame = -3
Query: 710 QESGQTGGGTGPLNNLGLEMLSSMFGGLGAGSLAVPNRSNEAPEQLYATQLSQLQEMGFF 531
Q+ QTG TG NN GL++L +MFG LGAG L+ N+ N PE+ +ATQL QLQEMGF+
Sbjct: 450 QDPTQTGAATGTANNGGLDLLMNMFGSLGAGGLSGTNQPNVPPEERFATQLQQLQEMGFY 509
Query: 530 DTQENIRALIATSGNVHAAVERLLGNSG 447
D ENIRAL+AT+GNV+AAVERLLG+ G
Sbjct: 510 DRAENIRALLATNGNVNAAVERLLGSIG 537
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,422,423
Number of Sequences: 1393205
Number of extensions: 14279848
Number of successful extensions: 36956
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 34883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36888
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
