Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005607A_C01 KMC005607A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194105.1| leucine-rich repeat transmembrane protein kinas... 102 3e-21
dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica ... 100 2e-20
dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sat... 89 4e-17
ref|NP_200638.1| leucine-rich repeat transmembrane protein kinas... 88 6e-17
ref|NP_180241.1| leucine-rich repeat transmembrane protein kinas... 85 7e-16
>ref|NP_194105.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g23740.1 [Arabidopsis thaliana]
gi|7446453|pir||T05606 protein kinase homolog F9D16.210
- Arabidopsis thaliana gi|4454043|emb|CAA23040.1|
putative receptor kinase [Arabidopsis thaliana]
gi|7269223|emb|CAB81292.1| putative receptor kinase
[Arabidopsis thaliana] gi|26451766|dbj|BAC42978.1|
putative receptor kinase [Arabidopsis thaliana]
Length = 638
Score = 102 bits (254), Expect = 3e-21
Identities = 47/58 (81%), Positives = 53/58 (91%)
Frame = -3
Query: 557 DEMIHLLRWVHSIVREEWTAEVFDLELMRYPYIEEEMVEMLQIAMSCVVRMPDPRPKM 384
DE+IHL+RWVHS+VREEWTAEVFD+EL+RY IEEEMVEMLQIAMSCVV+ D RPKM
Sbjct: 541 DEIIHLVRWVHSVVREEWTAEVFDIELLRYTNIEEEMVEMLQIAMSCVVKAADQRPKM 598
>dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711799|dbj|BAB07903.1| putative receptor kinase
[Oryza sativa (japonica cultivar-group)]
Length = 641
Score = 99.8 bits (247), Expect = 2e-20
Identities = 45/58 (77%), Positives = 53/58 (90%)
Frame = -3
Query: 557 DEMIHLLRWVHSIVREEWTAEVFDLELMRYPYIEEEMVEMLQIAMSCVVRMPDPRPKM 384
+E++HL+RWV S+VREEWTAEVFD+ELMRYP IEEEMVEMLQIAM+CV R P+ RPKM
Sbjct: 543 NEVVHLVRWVQSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIAMACVSRTPERRPKM 600
>dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)] gi|21104781|dbj|BAB93368.1| putative
receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 637
Score = 89.0 bits (219), Expect = 4e-17
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = -3
Query: 557 DEMIHLLRWVHSIVREEWTAEVFDLELMRYPYIEEEMVEMLQIAMSCVVRMPDPRPKM 384
D + HL RWV S+VREEWTAEVFD++L+R+P IE+EMV+MLQ+AM+CV PD RPKM
Sbjct: 548 DSIEHLPRWVQSVVREEWTAEVFDVDLLRHPNIEDEMVQMLQVAMACVAAPPDQRPKM 605
>ref|NP_200638.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g58300.1, supported by cDNA: gi_18086390
[Arabidopsis thaliana] gi|8777331|dbj|BAA96921.1|
receptor-like protein kinase [Arabidopsis thaliana]
gi|18086391|gb|AAL57654.1| unknown protein [Arabidopsis
thaliana] gi|24797034|gb|AAN64529.1| At5g58299/At5g58299
[Arabidopsis thaliana]
Length = 654
Score = 88.2 bits (217), Expect = 6e-17
Identities = 39/58 (67%), Positives = 50/58 (85%)
Frame = -3
Query: 557 DEMIHLLRWVHSIVREEWTAEVFDLELMRYPYIEEEMVEMLQIAMSCVVRMPDPRPKM 384
D+M+ L RWV S+VREEWT+EVFD+ELMR+ IEEEMV+MLQIAM+CV ++P+ RP M
Sbjct: 562 DDMVDLPRWVQSVVREEWTSEVFDIELMRFQNIEEEMVQMLQIAMACVAQVPEVRPTM 619
>ref|NP_180241.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g26730.1, supported by cDNA: gi_15292872
[Arabidopsis thaliana] gi|25407845|pir||B84664 probable
receptor-like protein kinase [imported] - Arabidopsis
thaliana gi|2760839|gb|AAB95307.1| putative
receptor-like protein kinase [Arabidopsis thaliana]
Length = 658
Score = 84.7 bits (208), Expect = 7e-16
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = -3
Query: 557 DEMIHLLRWVHSIVREEWTAEVFDLELMRYPYIEEEMVEMLQIAMSCVVRMPDPRPKM 384
+E I L RWV S+VREEWTAEVFD+ELMRY IEEEMV++LQIAM+CV +PD RP M
Sbjct: 552 EEGIDLPRWVLSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVPDQRPVM 609
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,538,062
Number of Sequences: 1393205
Number of extensions: 10630592
Number of successful extensions: 29582
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 28263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29532
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
