Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005606A_C01 KMC005606A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564482.1| expressed protein; protein id: At1g42960.1, sup... 69 4e-11
gb|AAL32857.1| Unknown protein [Arabidopsis thaliana] 42 0.004
ref|NP_197169.2| putative protein; similar to unknown protein (g... 42 0.004
dbj|BAB10193.1| protein; similar to unknown protein [Arabidopsis... 42 0.004
ref|NP_186940.1| unknown protein; protein id: At3g02900.1 [Arabi... 38 0.091
>ref|NP_564482.1| expressed protein; protein id: At1g42960.1, supported by cDNA:
gi_13878130, supported by cDNA: gi_17104806 [Arabidopsis
thaliana] gi|25373224|pir||B96497 unknown protein
[imported] - Arabidopsis thaliana
gi|12323056|gb|AAG51516.1|AC068324_4 unknown protein
[Arabidopsis thaliana]
gi|13878131|gb|AAK44143.1|AF370328_1 unknown protein
[Arabidopsis thaliana] gi|17104807|gb|AAL34292.1|
unknown protein [Arabidopsis thaliana]
Length = 168
Score = 68.9 bits (167), Expect = 4e-11
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = -3
Query: 543 ALEKTRKVLAEKIEQLNAAIDEVSSQLRSEDEGPNGVAVNSDELEAAA 400
ALEKTRKVLAEKI QLN+AID+VSSQL+SED PNG A+++DE+EA A
Sbjct: 122 ALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDT-PNGAALSTDEIEATA 168
>gb|AAL32857.1| Unknown protein [Arabidopsis thaliana]
Length = 168
Score = 42.4 bits (98), Expect = 0.004
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Frame = -3
Query: 540 LEKTRKVLAEKIEQLNAAIDEVSSQLRSEDEGPN--GVAVNSD-ELEA 406
LEKTR+ L EKI QLN+AID VSS+LR ++ + V V +D E+EA
Sbjct: 119 LEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEA 166
>ref|NP_197169.2| putative protein; similar to unknown protein (gb|AAF26969.1);
protein id: At5g16660.1, supported by cDNA: gi_17065405
[Arabidopsis thaliana] gi|24899755|gb|AAN65092.1|
Unknown protein [Arabidopsis thaliana]
Length = 168
Score = 42.4 bits (98), Expect = 0.004
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Frame = -3
Query: 540 LEKTRKVLAEKIEQLNAAIDEVSSQLRSEDEGPN--GVAVNSD-ELEA 406
LEKTR+ L EKI QLN+AID VSS+LR ++ + V V +D E+EA
Sbjct: 119 LEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEA 166
>dbj|BAB10193.1| protein; similar to unknown protein [Arabidopsis thaliana]
Length = 177
Score = 42.4 bits (98), Expect = 0.004
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Frame = -3
Query: 540 LEKTRKVLAEKIEQLNAAIDEVSSQLRSEDEGPN--GVAVNSD-ELEA 406
LEKTR+ L EKI QLN+AID VSS+LR ++ + V V +D E+EA
Sbjct: 128 LEKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEA 175
>ref|NP_186940.1| unknown protein; protein id: At3g02900.1 [Arabidopsis thaliana]
gi|6728971|gb|AAF26969.1|AC018363_14 unknown protein
[Arabidopsis thaliana] gi|27311637|gb|AAO00784.1|
unknown protein [Arabidopsis thaliana]
Length = 162
Score = 37.7 bits (86), Expect = 0.091
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 7/54 (12%)
Frame = -3
Query: 540 LEKTRKVLAEKIEQLNAAIDEVSSQLR------SEDEGPNGVAVNSD-ELEAAA 400
LE+ R++L EKI QLN+AID+VSS+L+ S++ V V +D E EA A
Sbjct: 109 LEERREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVPVETDAEAEATA 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,387,144
Number of Sequences: 1393205
Number of extensions: 7861708
Number of successful extensions: 27205
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25798
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
