Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005594A_C01 KMC005594A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201006.1| auxin response factor - like protein; protein i... 296 2e-79
gb|AAK55665.1|AF378862_1 AT5g62000/mtg10_20 [Arabidopsis thalian... 296 2e-79
dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis ... 296 2e-79
emb|CAC83756.1| auxin response factor 1 [Oryza sativa (japonica ... 286 2e-76
gb|AAG43286.2|AF140228_1 putative auxin response factor 1 [Oryza... 283 8e-76
>ref|NP_201006.1| auxin response factor - like protein; protein id: At5g62000.1
[Arabidopsis thaliana]
Length = 371
Score = 296 bits (757), Expect = 2e-79
Identities = 152/190 (80%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Frame = +3
Query: 3 PRFHVHSFCLTLTASDTSTHAGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRF 182
PRF VHSFC TLTASDTSTH GFSVLRRHADECLPPLDMS+QPPTQ LVAKDLH +EWRF
Sbjct: 155 PRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRF 214
Query: 183 RHIFLGQPRRHLLLSAWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANVSSSV 362
RHIF GQPRRHLL S WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ NV SSV
Sbjct: 215 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSV 274
Query: 363 ISSPSLHLGVLATAWHANLTGTMFTVYY*PRTSPSCNLLFLMINTWSPLPNNYTIAMRFK 542
ISS S+HLGVLATAWHA TGTMFTVYY PRTSPS + + NNY+I MRFK
Sbjct: 275 ISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPS-EFIVPFDQYMESVKNNYSIGMRFK 333
Query: 543 -*VEGEETPE 569
EGEE PE
Sbjct: 334 MRFEGEEAPE 343
>gb|AAK55665.1|AF378862_1 AT5g62000/mtg10_20 [Arabidopsis thaliana]
gi|24111405|gb|AAN46837.1| At5g62000/mtg10_20
[Arabidopsis thaliana]
Length = 678
Score = 296 bits (757), Expect = 2e-79
Identities = 152/190 (80%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Frame = +3
Query: 3 PRFHVHSFCLTLTASDTSTHAGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRF 182
PRF VHSFC TLTASDTSTH GFSVLRRHADECLPPLDMS+QPPTQ LVAKDLH +EWRF
Sbjct: 157 PRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRF 216
Query: 183 RHIFLGQPRRHLLLSAWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANVSSSV 362
RHIF GQPRRHLL S WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ NV SSV
Sbjct: 217 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSV 276
Query: 363 ISSPSLHLGVLATAWHANLTGTMFTVYY*PRTSPSCNLLFLMINTWSPLPNNYTIAMRFK 542
ISS S+HLGVLATAWHA TGTMFTVYY PRTSPS + + NNY+I MRFK
Sbjct: 277 ISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPS-EFIVPFDQYMESVKNNYSIGMRFK 335
Query: 543 -*VEGEETPE 569
EGEE PE
Sbjct: 336 MRFEGEEAPE 345
>dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis thaliana]
gi|23397283|gb|AAN31923.1| auxin response factor
[Arabidopsis thaliana]
Length = 859
Score = 296 bits (757), Expect = 2e-79
Identities = 152/190 (80%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Frame = +3
Query: 3 PRFHVHSFCLTLTASDTSTHAGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRF 182
PRF VHSFC TLTASDTSTH GFSVLRRHADECLPPLDMS+QPPTQ LVAKDLH +EWRF
Sbjct: 157 PRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRF 216
Query: 183 RHIFLGQPRRHLLLSAWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANVSSSV 362
RHIF GQPRRHLL S WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ NV SSV
Sbjct: 217 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSV 276
Query: 363 ISSPSLHLGVLATAWHANLTGTMFTVYY*PRTSPSCNLLFLMINTWSPLPNNYTIAMRFK 542
ISS S+HLGVLATAWHA TGTMFTVYY PRTSPS + + NNY+I MRFK
Sbjct: 277 ISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPS-EFIVPFDQYMESVKNNYSIGMRFK 335
Query: 543 -*VEGEETPE 569
EGEE PE
Sbjct: 336 MRFEGEEAPE 345
>emb|CAC83756.1| auxin response factor 1 [Oryza sativa (japonica cultivar-group)]
Length = 836
Score = 286 bits (731), Expect = 2e-76
Identities = 149/189 (78%), Positives = 155/189 (81%), Gaps = 1/189 (0%)
Frame = +3
Query: 6 RFHVHSFCLTLTASDTSTHAGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRFR 185
R VHSFC TLTASDTSTH GFSVLRRHADECLPPLDMS+QPPTQ LVAKDLHG EWRFR
Sbjct: 126 RPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFR 185
Query: 186 HIFLGQPRRHLLLSAWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANVSSSVI 365
HIF GQPRRHLL S WSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NV SSVI
Sbjct: 186 HIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVI 245
Query: 366 SSPSLHLGVLATAWHANLTGTMFTVYY*PRTSPSCNLLFLMINTWSPLPNNYTIAMRFK- 542
SS S+HLGVLATAWHA TGTMFTVYY PRTSP+ + L NY+I MRFK
Sbjct: 246 SSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPA-EFVVPYDRYMESLKQNYSIGMRFKM 304
Query: 543 *VEGEETPE 569
EGEE PE
Sbjct: 305 RFEGEEAPE 313
>gb|AAG43286.2|AF140228_1 putative auxin response factor 1 [Oryza sativa (indica
cultivar-group)]
Length = 857
Score = 283 bits (725), Expect = 8e-76
Identities = 148/189 (78%), Positives = 154/189 (81%), Gaps = 1/189 (0%)
Frame = +3
Query: 6 RFHVHSFCLTLTASDTSTHAGFSVLRRHADECLPPLDMSKQPPTQALVAKDLHGSEWRFR 185
R VHSFC TLTASDTSTH GFSVLRRHADECLPPLDMS+QPPTQ LVAKDLHG EWRFR
Sbjct: 142 RPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFR 201
Query: 186 HIFLGQPRRHLLLSAWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQANVSSSVI 365
HIF GQPRRHLL S WSVFVS+KRLVAGDAFIFLRGENGELRVGVRRAMRQQ NV SSVI
Sbjct: 202 HIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVI 261
Query: 366 SSPSLHLGVLATAWHANLTGTMFTVYY*PRTSPSCNLLFLMINTWSPLPNNYTIAMRFK- 542
SS S+HLGVLATAWHA TGTMFTVYY PRTSP+ + L NY+I MRFK
Sbjct: 262 SSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPA-EFVVPYDRYMESLKRNYSIGMRFKM 320
Query: 543 *VEGEETPE 569
E EE PE
Sbjct: 321 RFESEEAPE 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,311,944
Number of Sequences: 1393205
Number of extensions: 12119113
Number of successful extensions: 24714
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 23880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24671
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
