Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005589A_C01 KMC005589A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC19689.1| sucrose/proton symporter [Daucus carota] 60 2e-21
pir||T14340 sucrose-proton transport protein - carrot gi|2969884... 60 2e-21
dbj|BAA89458.1| sucrose transporter protein [Daucus carota] 60 2e-21
pir||T12198 sucrose transport protein - fava bean gi|1935019|emb... 59 5e-21
gb|AAC99332.1| sucrose transporter [Apium graveolens] 58 5e-21
>emb|CAC19689.1| sucrose/proton symporter [Daucus carota]
Length = 515
Score = 59.7 bits (143), Expect(3) = 2e-21
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -2
Query: 533 PSTGVKASAMILFSVLGIPLAITYSIPFALGSIYSTSN 420
PS GVKA A+ LFS+LGIPL+ITYSIPFAL SIYS+ +
Sbjct: 401 PSAGVKAGALSLFSILGIPLSITYSIPFALASIYSSGS 438
Score = 48.1 bits (113), Expect(3) = 2e-21
Identities = 22/28 (78%), Positives = 25/28 (88%)
Frame = -1
Query: 330 DALFGGGNLPAFVVGAIMAVVSAILAIV 247
D+LFGGGNLPAFVVGAI A +S +LAIV
Sbjct: 468 DSLFGGGNLPAFVVGAISAAISGVLAIV 495
Score = 35.8 bits (81), Expect(3) = 2e-21
Identities = 15/29 (51%), Positives = 23/29 (78%)
Frame = -3
Query: 421 TGGGKGLYFGVHNIAMVIPQIIIWGLSGP 335
+G G+GL GV N+A+V+PQ+I+ L+GP
Sbjct: 438 SGAGQGLSLGVLNLAIVVPQMIVSVLAGP 466
>pir||T14340 sucrose-proton transport protein - carrot
gi|2969884|emb|CAA76369.1| sucrose/H+ symporter [Daucus
carota]
Length = 515
Score = 59.7 bits (143), Expect(3) = 2e-21
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -2
Query: 533 PSTGVKASAMILFSVLGIPLAITYSIPFALGSIYSTSN 420
PS GVKA A+ LFS+LGIPL+ITYSIPFAL SIYS+ +
Sbjct: 401 PSAGVKAGALSLFSILGIPLSITYSIPFALASIYSSGS 438
Score = 48.1 bits (113), Expect(3) = 2e-21
Identities = 22/28 (78%), Positives = 25/28 (88%)
Frame = -1
Query: 330 DALFGGGNLPAFVVGAIMAVVSAILAIV 247
D+LFGGGNLPAFVVGAI A +S +LAIV
Sbjct: 468 DSLFGGGNLPAFVVGAISAAISGVLAIV 495
Score = 35.8 bits (81), Expect(3) = 2e-21
Identities = 15/29 (51%), Positives = 23/29 (78%)
Frame = -3
Query: 421 TGGGKGLYFGVHNIAMVIPQIIIWGLSGP 335
+G G+GL GV N+A+V+PQ+I+ L+GP
Sbjct: 438 SGAGQGLSLGVLNLAIVVPQMIVSVLAGP 466
>dbj|BAA89458.1| sucrose transporter protein [Daucus carota]
Length = 515
Score = 59.7 bits (143), Expect(3) = 2e-21
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = -2
Query: 533 PSTGVKASAMILFSVLGIPLAITYSIPFALGSIYSTSN 420
PS GVKA A+ LFS+LGIPL+ITYSIPFAL SIYS+ +
Sbjct: 401 PSAGVKAGALSLFSILGIPLSITYSIPFALASIYSSGS 438
Score = 48.1 bits (113), Expect(3) = 2e-21
Identities = 22/28 (78%), Positives = 25/28 (88%)
Frame = -1
Query: 330 DALFGGGNLPAFVVGAIMAVVSAILAIV 247
D+LFGGGNLPAFVVGAI A +S +LAIV
Sbjct: 468 DSLFGGGNLPAFVVGAISAAISGVLAIV 495
Score = 35.8 bits (81), Expect(3) = 2e-21
Identities = 15/29 (51%), Positives = 23/29 (78%)
Frame = -3
Query: 421 TGGGKGLYFGVHNIAMVIPQIIIWGLSGP 335
+G G+GL GV N+A+V+PQ+I+ L+GP
Sbjct: 438 SGAGQGLSLGVLNLAIVVPQMIVSVLAGP 466
>pir||T12198 sucrose transport protein - fava bean gi|1935019|emb|CAB07811.1|
sucrose transport protein [Vicia faba]
Length = 523
Score = 59.3 bits (142), Expect(3) = 5e-21
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = -2
Query: 533 PSTGVKASAMILFSVLGIPLAITYSIPFALGSIYSTSN 420
PS G+KA A+ LFSVLG+PLAITYSIPFAL SI+S+++
Sbjct: 408 PSEGIKAGALTLFSVLGVPLAITYSIPFALASIFSSTS 445
Score = 47.0 bits (110), Expect(3) = 5e-21
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -1
Query: 330 DALFGGGNLPAFVVGAIMAVVSAILAIV 247
DALFGGGNLPAFVVGA+ A+ S IL+I+
Sbjct: 475 DALFGGGNLPAFVVGAVAALASGILSII 502
Score = 35.8 bits (81), Expect(3) = 5e-21
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -3
Query: 421 TGGGKGLYFGVHNIAMVIPQIIIWGLSGP 335
+G G+GL GV N+A+VIPQ+ + LSGP
Sbjct: 445 SGAGQGLSLGVLNLAIVIPQMFVSVLSGP 473
>gb|AAC99332.1| sucrose transporter [Apium graveolens]
Length = 512
Score = 58.2 bits (139), Expect(3) = 5e-21
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = -2
Query: 533 PSTGVKASAMILFSVLGIPLAITYSIPFALGSIYSTSN 420
PS GVKA A+ LFS+LGIPL+IT+SIPFAL SIYS+ +
Sbjct: 398 PSAGVKAGALSLFSILGIPLSITFSIPFALASIYSSGS 435
Score = 48.1 bits (113), Expect(3) = 5e-21
Identities = 22/28 (78%), Positives = 25/28 (88%)
Frame = -1
Query: 330 DALFGGGNLPAFVVGAIMAVVSAILAIV 247
D+LFGGGNLPAFVVGAI A +S +LAIV
Sbjct: 465 DSLFGGGNLPAFVVGAISAAISGVLAIV 492
Score = 35.8 bits (81), Expect(3) = 5e-21
Identities = 15/29 (51%), Positives = 23/29 (78%)
Frame = -3
Query: 421 TGGGKGLYFGVHNIAMVIPQIIIWGLSGP 335
+G G+GL GV N+A+V+PQ+I+ L+GP
Sbjct: 435 SGAGQGLSLGVLNLAIVVPQMIVSVLAGP 463
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,135,027
Number of Sequences: 1393205
Number of extensions: 11874087
Number of successful extensions: 36265
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 34044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36195
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
