Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005588A_C01 KMC005588A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC51261.1| putative p150 [Homo sapiens] 35 0.63
gb|AAC51264.1| putative p150 [Homo sapiens] 32 4.1
pir||S65824 reverse transcriptase homolog - human transposon L1.... 32 4.1
pir||I38588 reverse transcriptase homolog - human retrotransposo... 32 4.1
gb|AAC51279.1| putative p150 [Homo sapiens] 32 4.1
>gb|AAC51261.1| putative p150 [Homo sapiens]
Length = 1275
Score = 34.7 bits (78), Expect = 0.63
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 368 GSNLTLWLLTCYLLINLN*KNSKIKAKARVAWIHTREP*ACC 243
GSN + +LT +N+N NS IK R +WI +++P CC
Sbjct: 3 GSNSHITILT----LNINGLNSAIKRHRRASWIKSQDPSVCC 40
>gb|AAC51264.1| putative p150 [Homo sapiens]
Length = 1275
Score = 32.0 bits (71), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 368 GSNLTLWLLTCYLLINLN*KNSKIKAKARVAWIHTREP*ACC 243
GSN + +LT +N+N NS IK +WI +++P CC
Sbjct: 3 GSNSHITILT----LNINGLNSAIKRHRLASWIKSQDPSVCC 40
>pir||S65824 reverse transcriptase homolog - human transposon L1.1
gi|339771|gb|AAA51622.1| ORF2 [Homo sapiens]
Length = 1275
Score = 32.0 bits (71), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 368 GSNLTLWLLTCYLLINLN*KNSKIKAKARVAWIHTREP*ACC 243
GSN + +LT +N+N NS IK +WI +++P CC
Sbjct: 3 GSNSHITILT----LNINGLNSAIKRHRLASWIKSQDPSVCC 40
>pir||I38588 reverse transcriptase homolog - human retrotransposon L1
gi|483916|gb|AAB60345.1| ORF2, encodes a reverse
transcriptase homolog
Length = 1275
Score = 32.0 bits (71), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 368 GSNLTLWLLTCYLLINLN*KNSKIKAKARVAWIHTREP*ACC 243
GSN + +LT +N+N NS IK +WI +++P CC
Sbjct: 3 GSNSHITILT----LNINGLNSAIKRHRLASWIKSQDPSVCC 40
>gb|AAC51279.1| putative p150 [Homo sapiens]
Length = 1275
Score = 32.0 bits (71), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 368 GSNLTLWLLTCYLLINLN*KNSKIKAKARVAWIHTREP*ACC 243
GSN + +LT +N+N NS IK +WI +++P CC
Sbjct: 3 GSNSHITILT----LNINGLNSAIKRHRLASWIKSQDPSVCC 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,712,753
Number of Sequences: 1393205
Number of extensions: 7502195
Number of successful extensions: 12333
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12332
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
