Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005586A_C01 KMC005586A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13029.1| unknown protein [Arabidopsis thaliana] gi|2213651... 76 2e-13
gb|AAM65366.1| polygalacturonase-like protein [Arabidopsis thali... 76 2e-13
ref|NP_566292.1| polygalacturonase, putative; protein id: At3g06... 76 2e-13
dbj|BAA95779.1| polygalacturonase-like protein [Arabidopsis thal... 72 3e-12
gb|AAM62920.1| polygalacturonase, putative [Arabidopsis thaliana] 72 3e-12
>gb|AAM13029.1| unknown protein [Arabidopsis thaliana] gi|22136514|gb|AAM91335.1|
unknown protein [Arabidopsis thaliana]
Length = 446
Score = 75.9 bits (185), Expect = 2e-13
Identities = 32/69 (46%), Positives = 53/69 (76%)
Frame = -1
Query: 491 LQDITGTDITIAGNFAGLQDSPFTNICLSHITLSMNFASSITWECSNVSGYSDSVFPKPC 312
L +I+G +I IAG G+++SPF+++ LS+++LSM+ SS++W+CS V G S+SV P+PC
Sbjct: 372 LSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSWQCSYVYGSSESVIPEPC 431
Query: 311 PNLESHSDS 285
P L+ +D+
Sbjct: 432 PELKRDADA 440
>gb|AAM65366.1| polygalacturonase-like protein [Arabidopsis thaliana]
Length = 377
Score = 75.9 bits (185), Expect = 2e-13
Identities = 32/69 (46%), Positives = 53/69 (76%)
Frame = -1
Query: 491 LQDITGTDITIAGNFAGLQDSPFTNICLSHITLSMNFASSITWECSNVSGYSDSVFPKPC 312
L +I+G +I IAG G+++SPF+++ LS+++LSM+ SS++W+CS V G S+SV P+PC
Sbjct: 303 LSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSWQCSYVYGSSESVIPEPC 362
Query: 311 PNLESHSDS 285
P L+ +D+
Sbjct: 363 PELKRDADA 371
>ref|NP_566292.1| polygalacturonase, putative; protein id: At3g06770.1, supported by
cDNA: 38575. [Arabidopsis thaliana]
gi|7549636|gb|AAF63821.1| unknown protein [Arabidopsis
thaliana]
Length = 377
Score = 75.9 bits (185), Expect = 2e-13
Identities = 32/69 (46%), Positives = 53/69 (76%)
Frame = -1
Query: 491 LQDITGTDITIAGNFAGLQDSPFTNICLSHITLSMNFASSITWECSNVSGYSDSVFPKPC 312
L +I+G +I IAG G+++SPF+++ LS+++LSM+ SS++W+CS V G S+SV P+PC
Sbjct: 303 LSNISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSWQCSYVYGSSESVIPEPC 362
Query: 311 PNLESHSDS 285
P L+ +D+
Sbjct: 363 PELKRDADA 371
>dbj|BAA95779.1| polygalacturonase-like protein [Arabidopsis thaliana]
Length = 453
Score = 72.4 bits (176), Expect = 3e-12
Identities = 37/73 (50%), Positives = 49/73 (66%)
Frame = -1
Query: 494 ILQDITGTDITIAGNFAGLQDSPFTNICLSHITLSMNFASSITWECSNVSGYSDSVFPKP 315
++++ TG DI +AGN G+ +SPFT+ICL+ I L S +W CSNVSG+SD V P+P
Sbjct: 366 VMRNFTGVDIGVAGNLTGIGESPFTSICLADIHLQTR--SEESWICSNVSGFSDDVSPEP 423
Query: 314 CPNLESHSDSSSF 276
C L S S SS F
Sbjct: 424 CQELMS-SPSSCF 435
>gb|AAM62920.1| polygalacturonase, putative [Arabidopsis thaliana]
Length = 453
Score = 72.4 bits (176), Expect = 3e-12
Identities = 37/73 (50%), Positives = 49/73 (66%)
Frame = -1
Query: 494 ILQDITGTDITIAGNFAGLQDSPFTNICLSHITLSMNFASSITWECSNVSGYSDSVFPKP 315
++++ TG DI +AGN G+ +SPFT+ICL+ I L S +W CSNVSG+SD V P+P
Sbjct: 366 VMRNFTGVDIGVAGNLTGIGESPFTSICLADIHLQTR--SEESWICSNVSGFSDDVSPEP 423
Query: 314 CPNLESHSDSSSF 276
C L S S SS F
Sbjct: 424 CQELMS-SPSSCF 435
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,350,770
Number of Sequences: 1393205
Number of extensions: 9526254
Number of successful extensions: 27393
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 26311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27346
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
