Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005585A_C01 KMC005585A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16473.1| polyprotein-like [Oryza sativa (japonica cultiva... 38 0.070
gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [... 37 0.20
sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associ... 37 0.20
gb|AAC12944.1| TPA inducible protein [Homo sapiens] 37 0.20
gb|AAB91443.1| CTG7a [Homo sapiens] 37 0.20
>dbj|BAC16473.1| polyprotein-like [Oryza sativa (japonica cultivar-group)]
gi|27261110|dbj|BAC45223.1| OJ1340_C08.40 [Oryza sativa
(japonica cultivar-group)]
Length = 1112
Score = 38.1 bits (87), Expect = 0.070
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = +1
Query: 271 PDPISPCPCVIPPHLYIQILPQTHTHNILSIHHHRNHQYP-PPQPPQPSLSDNPCTLFD 444
P P+SP P IP +P T T + H+ R + P QP QP+L D C++ D
Sbjct: 518 PSPVSPPPSHIPASSSPPHVPSTITLDTFPFHYSRRPKIPNESQPSQPTLEDPTCSVDD 576
>gb|AAK58423.1|AF328769_1 PC2-glutamine-rich-associated protein [Homo sapiens]
Length = 746
Score = 36.6 bits (83), Expect = 0.20
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +1
Query: 277 PISPCPCVIPPHLYIQILPQTHTHNILSIHHHRNHQYPPPQPPQPSLSDNPCTLFDPTS 453
PI P P Q LPQ L HH H PPPQP QP ++ N + P S
Sbjct: 267 PIQQPPMQQPQPPPSQALPQQ-----LQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQS 320
>sp|Q96RN5|PCAP_HUMAN Positive cofactor 2 glutamine/Q-rich-associated protein (PC2
glutamine/Q-rich-associated protein) (TPA-inducible
gene-1) (TIG-1) (CTG7a) (Activator-recruited cofactor
105 kDa component) (ARC105)
Length = 788
Score = 36.6 bits (83), Expect = 0.20
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +1
Query: 277 PISPCPCVIPPHLYIQILPQTHTHNILSIHHHRNHQYPPPQPPQPSLSDNPCTLFDPTS 453
PI P P Q LPQ L HH H PPPQP QP ++ N + P S
Sbjct: 269 PIQQPPMQQPQPPPSQALPQQ-----LQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQS 322
>gb|AAC12944.1| TPA inducible protein [Homo sapiens]
Length = 579
Score = 36.6 bits (83), Expect = 0.20
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +1
Query: 277 PISPCPCVIPPHLYIQILPQTHTHNILSIHHHRNHQYPPPQPPQPSLSDNPCTLFDPTS 453
PI P P Q LPQ L HH H PPPQP QP ++ N + P S
Sbjct: 243 PIQQPPMQQPQPPPSQALPQQ-----LQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQS 296
>gb|AAB91443.1| CTG7a [Homo sapiens]
Length = 349
Score = 36.6 bits (83), Expect = 0.20
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +1
Query: 277 PISPCPCVIPPHLYIQILPQTHTHNILSIHHHRNHQYPPPQPPQPSLSDNPCTLFDPTS 453
PI P P Q LPQ L HH H PPPQP QP ++ N + P S
Sbjct: 85 PIQQPPMQQPQPPPSQALPQQ-----LQQMHHTQHHQPPPQPQQPPVAQNQPSQLPPQS 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,770,473
Number of Sequences: 1393205
Number of extensions: 13370626
Number of successful extensions: 90201
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 56934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82492
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
