Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005582A_C01 KMC005582A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55665.1|AF378862_1 AT5g62000/mtg10_20 [Arabidopsis thalian... 120 1e-26
dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis ... 120 1e-26
ref|NP_201006.1| auxin response factor - like protein; protein i... 114 1e-24
dbj|BAB85913.1| auxin response factor 2 [Oryza sativa] 110 2e-23
dbj|BAB92903.1| auxin response factor 2 [Oryza sativa (japonica ... 110 2e-23
>gb|AAK55665.1|AF378862_1 AT5g62000/mtg10_20 [Arabidopsis thaliana]
gi|24111405|gb|AAN46837.1| At5g62000/mtg10_20
[Arabidopsis thaliana]
Length = 678
Score = 120 bits (300), Expect = 1e-26
Identities = 57/72 (79%), Positives = 61/72 (84%)
Frame = +2
Query: 344 LYRELWHACAGPLVTVPREGERVFYLPQVHIEQVAASTNQVAELHMPVYDLPPKI*CRVI 523
LYRELWHACAGPLVTVPR+ +RVFY PQ HIEQV ASTNQ AE MP+YDLP K+ CRVI
Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117
Query: 524 NVMLKAEPDTDE 559
NV LKAE DTDE
Sbjct: 118 NVDLKAEADTDE 129
>dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis thaliana]
gi|23397283|gb|AAN31923.1| auxin response factor
[Arabidopsis thaliana]
Length = 859
Score = 120 bits (300), Expect = 1e-26
Identities = 57/72 (79%), Positives = 61/72 (84%)
Frame = +2
Query: 344 LYRELWHACAGPLVTVPREGERVFYLPQVHIEQVAASTNQVAELHMPVYDLPPKI*CRVI 523
LYRELWHACAGPLVTVPR+ +RVFY PQ HIEQV ASTNQ AE MP+YDLP K+ CRVI
Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117
Query: 524 NVMLKAEPDTDE 559
NV LKAE DTDE
Sbjct: 118 NVDLKAEADTDE 129
>ref|NP_201006.1| auxin response factor - like protein; protein id: At5g62000.1
[Arabidopsis thaliana]
Length = 371
Score = 114 bits (284), Expect = 1e-24
Identities = 56/72 (77%), Positives = 60/72 (82%)
Frame = +2
Query: 344 LYRELWHACAGPLVTVPREGERVFYLPQVHIEQVAASTNQVAELHMPVYDLPPKI*CRVI 523
LYRELWHACAGPLVTVPR+ +RVFY PQ HIEQ ASTNQ AE MP+YDLP K+ CRVI
Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQ--ASTNQAAEQQMPLYDLPSKLLCRVI 115
Query: 524 NVMLKAEPDTDE 559
NV LKAE DTDE
Sbjct: 116 NVDLKAEADTDE 127
>dbj|BAB85913.1| auxin response factor 2 [Oryza sativa]
Length = 791
Score = 110 bits (274), Expect = 2e-23
Identities = 53/72 (73%), Positives = 58/72 (79%)
Frame = +2
Query: 344 LYRELWHACAGPLVTVPREGERVFYLPQVHIEQVAASTNQVAELHMPVYDLPPKI*CRVI 523
LY ELWHACAGPLVTVPR G+ VFY PQ HIEQV AS NQVA+ M +YDLP K+ CRV+
Sbjct: 4 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVL 63
Query: 524 NVMLKAEPDTDE 559
NV LKAE DTDE
Sbjct: 64 NVELKAEQDTDE 75
>dbj|BAB92903.1| auxin response factor 2 [Oryza sativa (japonica cultivar-group)]
Length = 826
Score = 110 bits (274), Expect = 2e-23
Identities = 53/72 (73%), Positives = 58/72 (79%)
Frame = +2
Query: 344 LYRELWHACAGPLVTVPREGERVFYLPQVHIEQVAASTNQVAELHMPVYDLPPKI*CRVI 523
LY ELWHACAGPLVTVPR G+ VFY PQ HIEQV AS NQVA+ M +YDLP K+ CRV+
Sbjct: 16 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVL 75
Query: 524 NVMLKAEPDTDE 559
NV LKAE DTDE
Sbjct: 76 NVELKAEQDTDE 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,833,710
Number of Sequences: 1393205
Number of extensions: 12261364
Number of successful extensions: 120935
Number of sequences better than 10.0: 598
Number of HSP's better than 10.0 without gapping: 54444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88847
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
