Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005580A_C01 KMC005580A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473003.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.9
ref|NP_508819.1| F-box domain containing protein (37.3 kD) [Caen... 32 6.5
>ref|NP_473003.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494292|pir||G71616 hypothetical protein PFB0375w -
malaria parasite (Plasmodium falciparum)
gi|3845167|gb|AAC71864.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1802
Score = 32.7 bits (73), Expect = 2.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 12 NITN*SITNDSLHSGVNMDNQIHGTHRVLQHIHHCDSQKGD 134
NI S TN ++H+ + ++ IH R QHIH+ K D
Sbjct: 580 NIDKISETNQNVHNAIRTNDNIHNIIRTNQHIHNVSKPKLD 620
>ref|NP_508819.1| F-box domain containing protein (37.3 kD) [Caenorhabditis elegans]
gi|7503298|pir||T16358 hypothetical protein f43c9.1 -
Caenorhabditis elegans gi|1065560|gb|AAA81469.1|
Hypothetical protein F43C9.1 [Caenorhabditis elegans]
Length = 320
Score = 31.6 bits (70), Expect = 6.5
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 28 PSQMIHYIVVSIWTTKSMEHTEFCNTFTTVIHKKVTPTPTITYLVKLYNIYFKIIM 195
PS+M+ + ++ + + C F +VI + P + YLVK+Y++ +I++
Sbjct: 7 PSEMLRSVFQNVNSQDIPKLRSVCQMFNSVIKENYCYLPRVAYLVKIYSVNGEIMI 62
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,379,843
Number of Sequences: 1393205
Number of extensions: 10429362
Number of successful extensions: 21749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21747
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
