Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005579A_C01 KMC005579A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S59541 heat shock transcription factor HSF29 - soybean (fra... 100 1e-20
ref|NP_192903.1| heat shock transcription factor - like protein;... 50 2e-05
emb|CAB63803.1| heat shock factor 7 [Arabidopsis thaliana] 50 2e-05
pir||T30282 calcium-binding protein - sea urchin (Strongylocentr... 39 0.048
ref|NP_609856.4| CG5674-PA [Drosophila melanogaster] gi|22953833... 38 0.063
>pir||S59541 heat shock transcription factor HSF29 - soybean (fragment)
gi|671866|emb|CAA87075.1| heat shock transcription
factor 29 [Glycine max]
Length = 298
Score = 100 bits (248), Expect = 1e-20
Identities = 67/122 (54%), Positives = 78/122 (63%), Gaps = 15/122 (12%)
Frame = -1
Query: 524 RAVSAPE-KTLLELIPAKDLTM-----HVAGGVGDAAAGTPCEKEVPKLFGVSIGLKRHR 363
R V PE K LEL+PAK ++ HV GG A E EVPKLFGVSIGLKR R
Sbjct: 179 RTVPVPEGKAALELLPAKHVSSADEAGHV-GGAAPCATANAGEAEVPKLFGVSIGLKRCR 237
Query: 362 IECEVEEEREERNQ---NSQMQS---SSQEPDGGSDMKSGQPVDGDDSADQE---PWLEL 210
ECE E E E++NQ +Q Q+ SSQEPD GSD+KS +P+DGDDS DQ+ WLEL
Sbjct: 238 TECEGEAEGEDQNQMQTRAQAQTQTQSSQEPDHGSDVKS-EPLDGDDSDDQDHDPRWLEL 296
Query: 209 GK 204
GK
Sbjct: 297 GK 298
>ref|NP_192903.1| heat shock transcription factor - like protein; protein id:
At4g11660.1, supported by cDNA: gi_20260613 [Arabidopsis
thaliana] gi|12643858|sp|Q9T0D3|HSF7_ARATH Heat shock
factor protein 7 (HSF 7) (Heat shock transcription
factor 7) (HSTF 7) gi|7485003|pir||T04213 heat shock
transcription factor homolog T5C23.90 - Arabidopsis
thaliana gi|4539457|emb|CAB39937.1| heat shock
transcription factor-like protein [Arabidopsis thaliana]
gi|7267866|emb|CAB78209.1| heat shock transcription
factor-like protein [Arabidopsis thaliana]
gi|20260614|gb|AAM13205.1| heat shock transcription
factor-like protein [Arabidopsis thaliana]
Length = 377
Score = 49.7 bits (117), Expect = 2e-05
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = -1
Query: 509 PEKTLLELIPAKD------LTMHVAGGVGDAAAGTPCEKEVPKLFGVSIGLKRHRIECEV 348
PE L+L+P + + + G+G E P+LFGVSIG+KR R E E+
Sbjct: 276 PEGKPLDLLPERQEMSEAIMASEIETGIGLKLG----EDLTPRLFGVSIGVKRARREEEL 331
Query: 347 EEEREERNQNSQMQSSSQEPDGGSDMKSGQPVDGDDSADQE-PWLELGK 204
EE + + ++++QE + SD+K+ +P++ ++S + WLELGK
Sbjct: 332 GAAEEE--DDDRREAAAQEGEQSSDVKA-EPMEENNSGNHNGSWLELGK 377
>emb|CAB63803.1| heat shock factor 7 [Arabidopsis thaliana]
Length = 328
Score = 49.7 bits (117), Expect = 2e-05
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Frame = -1
Query: 509 PEKTLLELIPAKD------LTMHVAGGVGDAAAGTPCEKEVPKLFGVSIGLKRHRIECEV 348
PE L+L+P + + + G+G E P+LFGVSIG+KR R E E+
Sbjct: 227 PEGKPLDLLPERQEMSEAIMASEIETGIGLKLG----EDLTPRLFGVSIGVKRARREEEL 282
Query: 347 EEEREERNQNSQMQSSSQEPDGGSDMKSGQPVDGDDSADQE-PWLELGK 204
EE + + ++++QE + SD+K+ +P++ ++S + WLELGK
Sbjct: 283 GAAEEE--DDDRREAAAQEGEQSSDVKA-EPMEENNSGNHNGSWLELGK 328
>pir||T30282 calcium-binding protein - sea urchin (Strongylocentrotus purpuratus)
gi|511894|gb|AAA30047.1| calcium-binding protein
Length = 1560
Score = 38.5 bits (88), Expect = 0.048
Identities = 17/38 (44%), Positives = 23/38 (59%)
Frame = -1
Query: 353 EVEEEREERNQNSQMQSSSQEPDGGSDMKSGQPVDGDD 240
E EE E+ QM+S QEP+ G+D+ SG+ DG D
Sbjct: 1304 EPEESEGEQEPQEQMESIVQEPESGADVDSGEVTDGSD 1341
Score = 36.6 bits (83), Expect = 0.18
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 353 EVEEEREERNQNSQMQSSSQEPDGGSDMKSGQPVDGDD 240
E EE E+ QM+S QEP+ D+ SG+ DG D
Sbjct: 1450 EPEESEGEQEPQDQMESEGQEPESEEDVDSGEVTDGSD 1487
Score = 32.3 bits (72), Expect = 3.5
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = -1
Query: 347 EEEREERNQNSQMQSSSQEPDGGSDMKSGQPVDGDD 240
EE QM+S QEP+ D+ SG+ DG D
Sbjct: 1184 EESEGAEQPQEQMESEGQEPESEEDVDSGEITDGSD 1219
>ref|NP_609856.4| CG5674-PA [Drosophila melanogaster] gi|22953833|gb|AAN11174.1|
CG5674-PA [Drosophila melanogaster]
Length = 489
Score = 38.1 bits (87), Expect = 0.063
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +2
Query: 203 ISQAPTKAPDQPSHHHQQVVQTSYQTHHQVPARRIAFANFDSFPLSLLQPHTLSYVVSAQ 382
+S AP QP+ QQ Q Q H QVP ++ P + LQ LS+ ++ Q
Sbjct: 210 VSPAPPPGQQQPTPQLQQQQQQQLQQHQQVPQQQ---QQHQQPPPTHLQEQQLSHQLAHQ 266
Query: 383 LKPQTTSE------PPSHTVCQQQHRQLRQLH 460
+S+ PP+H QQ +L+QL+
Sbjct: 267 RNRMMSSQLTQLATPPAHASHLQQLNKLQQLY 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,619,566
Number of Sequences: 1393205
Number of extensions: 10456450
Number of successful extensions: 40697
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 36686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40269
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
