Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005577A_C01 KMC005577A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_350020.1| Membrane associated, signal transduction histid... 33 4.0
ref|NP_501648.1| Putative plasma membrane membrane protein, with... 32 6.7
ref|NP_632679.1| hypothetical protein [Methanosarcina mazei Goe1... 32 6.7
ref|NP_644882.1| hypothetical protein [Staphylococcus aureus sub... 32 8.8
>ref|NP_350020.1| Membrane associated, signal transduction histidine kinase-like
ATPase [Clostridium acetobutylicum]
gi|25499228|pir||E97321 membrane associated, signal
transduction histidine kinase-like ATPase [imported] -
Clostridium acetobutylicum
gi|15026519|gb|AAK81360.1|AE007840_4 Membrane
associated, signal transduction histidine kinase-like
ATPase [Clostridium acetobutylicum]
Length = 397
Score = 32.7 bits (73), Expect = 4.0
Identities = 15/46 (32%), Positives = 29/46 (62%)
Frame = -2
Query: 565 RFHFILFAICCLYWLSLFTLFSQ*VKV*FFFISLIISIF*LLFMII 428
+ +F L +I C+ + +F+LF Q +K + F S+I ++ +LF I+
Sbjct: 10 KLNFRLLSIICIILVCVFSLFLQNIKEIYLFQSIIFTLIMILFFIM 55
>ref|NP_501648.1| Putative plasma membrane membrane protein, with at least 13
transmembrane domains, of bilaterial origin
[Caenorhabditis elegans] gi|7495815|pir||T19179
hypothetical protein C10C5.1 - Caenorhabditis elegans
gi|3874194|emb|CAA92444.1| Hypothetical protein C10C5.1
[Caenorhabditis elegans]
Length = 846
Score = 32.0 bits (71), Expect = 6.7
Identities = 24/67 (35%), Positives = 34/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 536 LSLLAQFVHFIFTVS*GLILFHKPNN*YFLAVIYDYCW----TSLRFNVLLWSQRKLLFW 369
L L FV F+FT G++ N+ YFLA ++ W T LR V ++ L+F+
Sbjct: 185 LRRLTNFVLFLFTAYVGIVKPSLSNSIYFLAFLFISTWWSTYTPLRHGVYNQIKKFLIFY 244
Query: 368 *SGLDFL 348
S L FL
Sbjct: 245 -SALHFL 250
>ref|NP_632679.1| hypothetical protein [Methanosarcina mazei Goe1]
gi|20905049|gb|AAM30351.1| hypothetical protein
[Methanosarcina mazei Goe1]
Length = 76
Score = 32.0 bits (71), Expect = 6.7
Identities = 22/59 (37%), Positives = 29/59 (48%), Gaps = 12/59 (20%)
Frame = -3
Query: 171 TFLSYFHFVV--FKFIY*YQNYHYFI----------HVSIAMVRILLNFSMAFLPFFKK 31
T SYFHFVV FK IY + Y F+ +++AM RI NF + F + K
Sbjct: 5 TKYSYFHFVVCLFKEIYLLRAYFDFVLKLTVHELTNELNLAMSRICCNFKLIFRRLYAK 63
>ref|NP_644882.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
gi|21203231|dbj|BAB93932.1| hypothetical protein
[Staphylococcus aureus subsp. aureus MW2]
Length = 203
Score = 31.6 bits (70), Expect = 8.8
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 11/82 (13%)
Frame = -3
Query: 231 FGAQ*EKLLSTYKPLLLV*RTFLSYFHFVVFKFIY*YQNYHYFIHVSIAMVRILLNFSMA 52
F Q K+ TYK F + F F++ Q Y Y+I ++ ++L F +A
Sbjct: 42 FFNQVNKVSETYK--------FATTFLFLILATAGISQFYLYYIVSALLFWLVILTFGIA 93
Query: 51 -----------FLPFFKKKKKK 19
FLPF+K+KKKK
Sbjct: 94 GIIFLMPYGLCFLPFYKQKKKK 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,260,077
Number of Sequences: 1393205
Number of extensions: 8589307
Number of successful extensions: 15529
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15508
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
