Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005575A_C01 KMC005575A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200638.1| leucine-rich repeat transmembrane protein kinas... 187 1e-46
dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sat... 157 2e-37
ref|NP_196135.1| leucine-rich repeat transmembrane protein kinas... 152 4e-36
ref|NP_187480.1| leucine-rich repeat transmembrane protein kinas... 150 1e-35
ref|NP_180241.1| leucine-rich repeat transmembrane protein kinas... 147 1e-34
>ref|NP_200638.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g58300.1, supported by cDNA: gi_18086390
[Arabidopsis thaliana] gi|8777331|dbj|BAA96921.1|
receptor-like protein kinase [Arabidopsis thaliana]
gi|18086391|gb|AAL57654.1| unknown protein [Arabidopsis
thaliana] gi|24797034|gb|AAN64529.1| At5g58299/At5g58299
[Arabidopsis thaliana]
Length = 654
Score = 187 bits (475), Expect = 1e-46
Identities = 93/117 (79%), Positives = 109/117 (92%), Gaps = 2/117 (1%)
Frame = -2
Query: 676 SDVYSFGVLLLEMLTGKAPLPSPGRDDMVDLPSWVQSVVREEWTAEVFDVELMKYQNLEE 497
SDVYSFGVL+LEMLTGK+P+ SP RDDMVDLP WVQSVVREEWT+EVFD+ELM++QN+EE
Sbjct: 537 SDVYSFGVLILEMLTGKSPVQSPSRDDMVDLPRWVQSVVREEWTSEVFDIELMRFQNIEE 596
Query: 496 EMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQSDSE-NRPSSEEN-KSKDSNVQ 332
EMVQMLQIAMACVA++P++RP+MD+VVRMIEEIR SDSE RPSS++N K KDSNVQ
Sbjct: 597 EMVQMLQIAMACVAQVPEVRPTMDDVVRMIEEIRVSDSETTRPSSDDNSKPKDSNVQ 653
>dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)] gi|21104781|dbj|BAB93368.1| putative
receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 637
Score = 157 bits (396), Expect = 2e-37
Identities = 78/113 (69%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Frame = -2
Query: 676 SDVYSFGVLLLEMLTGKAPLPSPGRDDMVD-LPSWVQSVVREEWTAEVFDVELMKYQNLE 500
SDVYSFGVL+LEMLTGKAPL SPGR+D ++ LP WVQSVVREEWTAEVFDV+L+++ N+E
Sbjct: 522 SDVYSFGVLVLEMLTGKAPLRSPGREDSIEHLPRWVQSVVREEWTAEVFDVDLLRHPNIE 581
Query: 499 EEMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQSDSENRPSSEENKSKDS 341
+EMVQMLQ+AMACVA PD RP MDEV+R I EIR S S +R EE + +S
Sbjct: 582 DEMVQMLQVAMACVAAPPDQRPKMDEVIRRIVEIRNSYSGSRTPPEEKQKDES 634
>ref|NP_196135.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g05160.1 [Arabidopsis thaliana]
gi|9759257|dbj|BAB09692.1| receptor-like protein kinase
[Arabidopsis thaliana]
Length = 640
Score = 152 bits (384), Expect = 4e-36
Identities = 75/113 (66%), Positives = 93/113 (81%), Gaps = 8/113 (7%)
Frame = -2
Query: 676 SDVYSFGVLLLEMLTGKAPLPSPGRDD---MVDLPSWVQSVVREEWTAEVFDVELMKYQN 506
SDVYSFGV++LEMLTGK PL PG +D ++DLP WV+SVVREEWTAEVFDVEL+K+QN
Sbjct: 521 SDVYSFGVVILEMLTGKTPLTQPGLEDERVVIDLPRWVRSVVREEWTAEVFDVELLKFQN 580
Query: 505 LEEEMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQSD-----SENRPSSE 362
+EEEMVQMLQ+A+ACVA+ P+ RP M+EV RMIE++R+ D +NR SSE
Sbjct: 581 IEEEMVQMLQLALACVARNPESRPKMEEVARMIEDVRRLDQSQQLQQNRTSSE 633
>ref|NP_187480.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g08680.1, supported by cDNA: gi_15982756
[Arabidopsis thaliana]
gi|12322735|gb|AAG51359.1|AC012562_20 putative protein
kinase; 49514-51513 [Arabidopsis thaliana]
Length = 640
Score = 150 bits (380), Expect = 1e-35
Identities = 85/120 (70%), Positives = 95/120 (78%), Gaps = 6/120 (5%)
Frame = -2
Query: 676 SDVYSFGVLLLEMLTGKAPLPSPGRDDMVDLPSWVQSVVREEWTAEVFDVELMKYQ-NLE 500
SDVYSFGVLLLEMLTGKA + G +++VDLP WVQSVVREEWT EVFDVEL+K Q N+E
Sbjct: 521 SDVYSFGVLLLEMLTGKAAGKTTGHEEVVDLPKWVQSVVREEWTGEVFDVELIKQQHNVE 580
Query: 499 EEMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQS----DSENRPSSEEN-KSKDSNV 335
EEMVQMLQIAMACV+K PD RPSM+EVV M+EEIR S S NR SS E +S DS V
Sbjct: 581 EEMVQMLQIAMACVSKHPDSRPSMEEVVNMMEEIRPSGSGPGSGNRASSPEMIRSSDSPV 640
>ref|NP_180241.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g26730.1, supported by cDNA: gi_15292872
[Arabidopsis thaliana] gi|25407845|pir||B84664 probable
receptor-like protein kinase [imported] - Arabidopsis
thaliana gi|2760839|gb|AAB95307.1| putative
receptor-like protein kinase [Arabidopsis thaliana]
Length = 658
Score = 147 bits (372), Expect = 1e-34
Identities = 74/119 (62%), Positives = 94/119 (78%), Gaps = 2/119 (1%)
Frame = -2
Query: 676 SDVYSFGVLLLEMLTGKAPLPSPGRDDMVDLPSWVQSVVREEWTAEVFDVELMKYQNLEE 497
SDVYSFGVLLLE+LTGK+P + ++ +DLP WV SVVREEWTAEVFDVELM+Y N+EE
Sbjct: 527 SDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEWTAEVFDVELMRYHNIEE 586
Query: 496 EMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQSDS--ENRPSSEENKSKDSNVQTP 326
EMVQ+LQIAMACV+ +PD RP M EV+RMIE++ +S++ + S ++ SK S QTP
Sbjct: 587 EMVQLLQIAMACVSTVPDQRPVMQEVLRMIEDVNRSETTDDGLRQSSDDPSKGSEGQTP 645
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,513,853
Number of Sequences: 1393205
Number of extensions: 12799858
Number of successful extensions: 40574
Number of sequences better than 10.0: 1930
Number of HSP's better than 10.0 without gapping: 37745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39464
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
