Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005573A_C01 KMC005573A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191251.1| putative protein; protein id: At3g56920.1 [Arab... 34 1.5
ref|NP_219337.1| carboxylesterase (est) [Treponema pallidum] gi|... 33 1.9
ref|NP_765322.1| ferrichrome ABC transporter [Staphylococcus epi... 33 2.5
ref|NP_071556.1| L-gulono-gamma-lactone oxidase [Rattus norvegic... 32 4.3
ref|NP_353349.1| AGR_C_556p [Agrobacterium tumefaciens] gi|25520... 32 4.3
>ref|NP_191251.1| putative protein; protein id: At3g56920.1 [Arabidopsis thaliana]
gi|11358435|pir||T51280 hypothetical protein T8M16_250 -
Arabidopsis thaliana gi|9663011|emb|CAC00755.1| putative
protein [Arabidopsis thaliana]
Length = 319
Score = 33.9 bits (76), Expect = 1.5
Identities = 23/86 (26%), Positives = 43/86 (49%)
Frame = -3
Query: 312 GWSLSIKFSESVDC*YVYLSPYPASCNVCSDTKWDLKSEDTKCPWIQASMILRFRIMFVI 133
G+++ +KF ++ +Y P C++C++ ++ D CPW+ + LR FV
Sbjct: 136 GFTVKVKFCDTCQ---LYRPPRAFHCSICNNC---VQRFDHHCPWVGQCIALRNYPFFVC 189
Query: 132 FCTLSILH*INLRYSFIYAL*KMVIV 55
F + S L I Y F+++ M+ V
Sbjct: 190 FLSCSTLLCI---YVFVFSWVSMLKV 212
>ref|NP_219337.1| carboxylesterase (est) [Treponema pallidum] gi|7520955|pir||C71267
probable carboxylesterase (est) - syphilis spirochete
gi|3323216|gb|AAC65855.1| carboxylesterase (est)
[Treponema pallidum]
Length = 293
Score = 33.5 bits (75), Expect = 1.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 546 LLKFCCMI*SLAEFLGLLQY*NKCTALKAFLTP*FLGGGGGALTYLHLYMSS 391
L FCC +LA +L + ++ CT++ + F GG A+ +H YM +
Sbjct: 24 LFTFCCFFTTLARYLLMAEH-TSCTSIHPLVRSAFYAGGAHAVLLIHGYMGT 74
>ref|NP_765322.1| ferrichrome ABC transporter [Staphylococcus epidermidis ATCC 12228]
gi|27316233|gb|AAO05408.1|AE016750_13 ferrichrome ABC
transporter [Staphylococcus epidermidis ATCC 12228]
Length = 343
Score = 33.1 bits (74), Expect = 2.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -2
Query: 535 LLHDLILG*VFRFTAVLKQMYSLESFSDPLIFGGGGGGSHLFALVHEFLPAFRTHLVSLF 356
+L LI+G +L Q + + P IFG G S + L+ +P+ ++ L
Sbjct: 75 MLAGLIIGGALAIAGLLMQAITKNPLASPQIFGVNAGASFVIVLITVLIPSLGSYSTILA 134
Query: 355 VVPAF 341
++ AF
Sbjct: 135 IIGAF 139
>ref|NP_071556.1| L-gulono-gamma-lactone oxidase [Rattus norvegicus]
gi|121141|sp|P10867|GGLO_RAT L-gulonolactone oxidase
(LGO) (L-gulono-gamma-lactone oxidase) (GLO)
gi|204150|gb|AAA41164.1| L-gulono-gamma-lactone oxidase
precursor
Length = 440
Score = 32.3 bits (72), Expect = 4.3
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = -2
Query: 478 MYSLESFSDPLIFGGGGGGSHLFALVHEFLPAFRTHLVSLFVVPAFHPLFDEGKRRLVPI 299
M +L + SD + G G G+H + H L T +V+L ++ A + + + R +
Sbjct: 107 MSNLGAVSDVTVAGVIGSGTHNTGIKHGILA---TQVVALTLMTADGEVLECSESRNADV 163
Query: 298 Y*IFRIS*LLICLSFSLSCKLQCVFRYQM 212
+ R+ L CL L+ LQCV ++Q+
Sbjct: 164 FQAARVH--LGCLGIILTVTLQCVPQFQL 190
>ref|NP_353349.1| AGR_C_556p [Agrobacterium tumefaciens] gi|25520233|pir||E97397
hypothetical protein AGR_C_556 [imported] -
Agrobacterium tumefaciens (strain C58, Cereon)
gi|15155221|gb|AAK86134.1| AGR_C_556p [Agrobacterium
tumefaciens str. C58 (Cereon)]
Length = 313
Score = 32.3 bits (72), Expect = 4.3
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Frame = -2
Query: 523 LILG*VFRFTA---VLKQMYSLESFSDPLIFGGGGGGSHL-FALVH---EFLPAFRTHLV 365
+I G +F A V+KQ S S+ PL+FGGG GS+ FA H FL + ++
Sbjct: 1 MIAGRELKFMAKAQVIKQALSYSSW--PLVFGGGLAGSYFAFAGSHPIAAFLAVYAGAVL 58
Query: 364 SLFVVPAFHP 335
SLF++ + P
Sbjct: 59 SLFLLERYIP 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,557,000
Number of Sequences: 1393205
Number of extensions: 12737172
Number of successful extensions: 54841
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 35782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50577
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
