Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005569A_C01 KMC005569A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32016.1|AF436834_1 AT3g14240/MLN21_2 [Arabidopsis thaliana] 104 9e-22
ref|NP_566483.1| subtilisin-like serine protease; protein id: At... 104 9e-22
gb|AAK25839.1|AF360129_1 putative subtilisin serine protease [Ar... 104 9e-22
gb|AAM60964.1| subtilisin-like serine protease [Arabidopsis thal... 103 2e-21
pir||T14845 antifreeze-like protein (af70) - Norway spruce gi|14... 54 1e-06
>gb|AAL32016.1|AF436834_1 AT3g14240/MLN21_2 [Arabidopsis thaliana]
Length = 581
Score = 104 bits (259), Expect = 9e-22
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = -2
Query: 559 IKPPPGMVVSVEPETLSFRRVAQKLNFLVRVQTREVKLSPGSSSMKSGSIVWSDGKHTVT 380
I+PP G V+VEPE LSFRRV QKL+F+VRV+T EVKLSPG++++++G IVWSDGK VT
Sbjct: 511 IRPPRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGKRNVT 570
Query: 379 SPLLVTMQQPL 347
SPL+VT+QQPL
Sbjct: 571 SPLVVTLQQPL 581
>ref|NP_566483.1| subtilisin-like serine protease; protein id: At3g14240.1, supported
by cDNA: 106539., supported by cDNA: gi_13430433,
supported by cDNA: gi_16930700 [Arabidopsis thaliana]
gi|9279572|dbj|BAB01030.1| subtilisin proteinase-like
protein [Arabidopsis thaliana]
Length = 775
Score = 104 bits (259), Expect = 9e-22
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = -2
Query: 559 IKPPPGMVVSVEPETLSFRRVAQKLNFLVRVQTREVKLSPGSSSMKSGSIVWSDGKHTVT 380
I+PP G V+VEPE LSFRRV QKL+F+VRV+T EVKLSPG++++++G IVWSDGK VT
Sbjct: 705 IRPPRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGKRNVT 764
Query: 379 SPLLVTMQQPL 347
SPL+VT+QQPL
Sbjct: 765 SPLVVTLQQPL 775
>gb|AAK25839.1|AF360129_1 putative subtilisin serine protease [Arabidopsis thaliana]
Length = 775
Score = 104 bits (259), Expect = 9e-22
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = -2
Query: 559 IKPPPGMVVSVEPETLSFRRVAQKLNFLVRVQTREVKLSPGSSSMKSGSIVWSDGKHTVT 380
I+PP G V+VEPE LSFRRV QKL+F+VRV+T EVKLSPG++++++G IVWSDGK VT
Sbjct: 705 IRPPRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGKRNVT 764
Query: 379 SPLLVTMQQPL 347
SPL+VT+QQPL
Sbjct: 765 SPLVVTLQQPL 775
>gb|AAM60964.1| subtilisin-like serine protease [Arabidopsis thaliana]
Length = 775
Score = 103 bits (256), Expect = 2e-21
Identities = 48/71 (67%), Positives = 62/71 (86%)
Frame = -2
Query: 559 IKPPPGMVVSVEPETLSFRRVAQKLNFLVRVQTREVKLSPGSSSMKSGSIVWSDGKHTVT 380
I+PP G V+VEPE LSFRRV QKL+F+VRV+T EVKLSPG++++++G +VWSDGK VT
Sbjct: 705 IRPPRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHMVWSDGKRNVT 764
Query: 379 SPLLVTMQQPL 347
SPL+VT+QQPL
Sbjct: 765 SPLVVTLQQPL 775
>pir||T14845 antifreeze-like protein (af70) - Norway spruce
gi|1483177|dbj|BAA13135.1| antifreeze-like protein
(af70) [Picea abies]
Length = 779
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/68 (42%), Positives = 37/68 (53%)
Frame = -2
Query: 562 TIKPPPGMVVSVEPETLSFRRVAQKLNFLVRVQTREVKLSPGSSSMKSGSIVWSDGKHTV 383
TI PPG+ V V PE L F + ++KL+F V V + G++VWSDGKH V
Sbjct: 715 TIDAPPGLNVKVSPEILHFSKTSKKLSFNVVFTPTNV----ATKGYAFGTLVWSDGKHNV 770
Query: 382 TSPLLVTM 359
SP V M
Sbjct: 771 RSPFAVNM 778
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,011,549
Number of Sequences: 1393205
Number of extensions: 11333177
Number of successful extensions: 29791
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 29057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29735
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
