Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005566A_C01 KMC005566A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86358 hypothetical protein F12K8.14 - Arabidopsis thaliana... 173 1e-42
ref|NP_564172.1| expressed protein; protein id: At1g22510.1, sup... 173 1e-42
gb|AAM63145.1| unknown [Arabidopsis thaliana] 173 1e-42
ref|NP_565037.1| Expressed protein; protein id: At1g72175.1, sup... 171 7e-42
gb|AAO41137.1| unknown protein [Oryza sativa (japonica cultivar-... 137 9e-32
>pir||D86358 hypothetical protein F12K8.14 - Arabidopsis thaliana
gi|6587838|gb|AAF18527.1|AC006551_13 Hypothetical
protein [Arabidopsis thaliana]
Length = 191
Score = 173 bits (439), Expect = 1e-42
Identities = 86/117 (73%), Positives = 99/117 (84%)
Frame = -3
Query: 543 RQEPEVAHVLSRIQTYNRFFGARSSGPLPRMLDLPFLLRRLAREFLDPQRSLPLVIRARV 364
R + V+ VL ++TYNR FG +SSG + RM DLPFLLRRL RE +DPQR+LPLVIRARV
Sbjct: 75 RNDATVSEVLHDVETYNRVFGGQSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARV 134
Query: 363 YIAMIISAIYVFSPIDIIPEGIWGVVGLLDDLLIVLIFFLHVAALYRSVLYRRHGGS 193
YIA+I+SAIY+ SPIDIIPEG+ GV+GLLDDLLI LI FLHVAALYRSVLY RHGGS
Sbjct: 135 YIALILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 191
>ref|NP_564172.1| expressed protein; protein id: At1g22510.1, supported by cDNA:
1981. [Arabidopsis thaliana]
Length = 185
Score = 173 bits (439), Expect = 1e-42
Identities = 86/117 (73%), Positives = 99/117 (84%)
Frame = -3
Query: 543 RQEPEVAHVLSRIQTYNRFFGARSSGPLPRMLDLPFLLRRLAREFLDPQRSLPLVIRARV 364
R + V+ VL ++TYNR FG +SSG + RM DLPFLLRRL RE +DPQR+LPLVIRARV
Sbjct: 69 RNDATVSEVLHDVETYNRVFGGQSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARV 128
Query: 363 YIAMIISAIYVFSPIDIIPEGIWGVVGLLDDLLIVLIFFLHVAALYRSVLYRRHGGS 193
YIA+I+SAIY+ SPIDIIPEG+ GV+GLLDDLLI LI FLHVAALYRSVLY RHGGS
Sbjct: 129 YIALILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 185
>gb|AAM63145.1| unknown [Arabidopsis thaliana]
Length = 185
Score = 173 bits (439), Expect = 1e-42
Identities = 86/117 (73%), Positives = 99/117 (84%)
Frame = -3
Query: 543 RQEPEVAHVLSRIQTYNRFFGARSSGPLPRMLDLPFLLRRLAREFLDPQRSLPLVIRARV 364
R + V+ VL ++TYNR FG +SSG + RM DLPFLLRRL RE +DPQR+LPLVIRARV
Sbjct: 69 RNDATVSEVLHDVETYNRVFGGQSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARV 128
Query: 363 YIAMIISAIYVFSPIDIIPEGIWGVVGLLDDLLIVLIFFLHVAALYRSVLYRRHGGS 193
YIA+I+SAIY+ SPIDIIPEG+ GV+GLLDDLLI LI FLHVAALYRSVLY RHGGS
Sbjct: 129 YIALILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 185
>ref|NP_565037.1| Expressed protein; protein id: At1g72175.1, supported by cDNA:
114972., supported by cDNA: gi_13878188, supported by
cDNA: gi_16323397 [Arabidopsis thaliana]
gi|13878189|gb|AAK44172.1|AF370357_1 unknown protein
[Arabidopsis thaliana] gi|16323398|gb|AAL15193.1|
unknown protein [Arabidopsis thaliana]
gi|21536916|gb|AAM61248.1| unknown [Arabidopsis
thaliana]
Length = 185
Score = 171 bits (432), Expect = 7e-42
Identities = 86/117 (73%), Positives = 96/117 (81%)
Frame = -3
Query: 543 RQEPEVAHVLSRIQTYNRFFGARSSGPLPRMLDLPFLLRRLAREFLDPQRSLPLVIRARV 364
R + V VL ++TYNR FG RSS + RM DLPFLLRRL RE +DPQR+LPLVIRARV
Sbjct: 69 RNDATVKEVLGNLETYNRLFGGRSSSLVQRMQDLPFLLRRLLREMMDPQRTLPLVIRARV 128
Query: 363 YIAMIISAIYVFSPIDIIPEGIWGVVGLLDDLLIVLIFFLHVAALYRSVLYRRHGGS 193
YIAMI+SA+Y+ SPIDIIPEG+ GVVGLLDDLLI LI FLHVAALYRSVLY RH GS
Sbjct: 129 YIAMILSAVYIISPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYFRHAGS 185
>gb|AAO41137.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 191
Score = 137 bits (345), Expect = 9e-32
Identities = 64/114 (56%), Positives = 83/114 (72%)
Frame = -3
Query: 537 EPEVAHVLSRIQTYNRFFGARSSGPLPRMLDLPFLLRRLAREFLDPQRSLPLVIRARVYI 358
+P++ HVL +Q YNR FG R+ DLPF +RRL RE LDPQR+LPLV RAR+ +
Sbjct: 77 DPQIQHVLGEVQHYNRIFGGTPRNLTQRLQDLPFFIRRLFRELLDPQRTLPLVFRARMVM 136
Query: 357 AMIISAIYVFSPIDIIPEGIWGVVGLLDDLLIVLIFFLHVAALYRSVLYRRHGG 196
+ +SAIYV SPIDI+PE + G+ G DD L++LI FLH+AA+YRS+L RHGG
Sbjct: 137 MVALSAIYVLSPIDILPENVLGLFGFFDDFLVLLIVFLHLAAVYRSLLLYRHGG 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,540,543
Number of Sequences: 1393205
Number of extensions: 10390914
Number of successful extensions: 26710
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 25860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26683
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
