Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005564A_C01 KMC005564A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM78582.1| RanGAP1 interacting protein [Arabidopsis thaliana] 167 6e-41
ref|NP_197360.1| putative protein; protein id: At5g18590.1 [Arab... 167 6e-41
pir||S03166 myosin heavy chain, gizzard smooth muscle [similarit... 45 6e-04
sp|P10587|MYHB_CHICK Myosin heavy chain, gizzard smooth muscle 45 6e-04
pir||S43556 plasminogen-binding protein MLC36 - Streptococcus sp... 40 0.014
>gb|AAM78582.1| RanGAP1 interacting protein [Arabidopsis thaliana]
Length = 708
Score = 167 bits (424), Expect = 6e-41
Identities = 82/110 (74%), Positives = 98/110 (88%)
Frame = -1
Query: 551 IASVLNSRQEMEKKMADTLKEMESLREKLGSLEFSLEEANHLSNIVHSDNVRLEHDVAFL 372
++ L S+QE +KK++D ++++E L+EKL LE + EEAN LSN+VHSDNVRLEHDVAFL
Sbjct: 594 VSVALRSKQETDKKLSDAMRDVELLKEKLTGLELAQEEANSLSNMVHSDNVRLEHDVAFL 653
Query: 371 KAVLDDTQKELHSTRGVIAGERARAFQLQYEVFHLKQRLQSMENRASTPR 222
KAVLDDTQKELHSTRGV+AGERARAFQLQ EVFHLKQRLQS+ENRA+TPR
Sbjct: 654 KAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAATPR 703
>ref|NP_197360.1| putative protein; protein id: At5g18590.1 [Arabidopsis thaliana]
Length = 792
Score = 167 bits (424), Expect = 6e-41
Identities = 82/110 (74%), Positives = 98/110 (88%)
Frame = -1
Query: 551 IASVLNSRQEMEKKMADTLKEMESLREKLGSLEFSLEEANHLSNIVHSDNVRLEHDVAFL 372
++ L S+QE +KK++D ++++E L+EKL LE + EEAN LSN+VHSDNVRLEHDVAFL
Sbjct: 678 VSVALRSKQETDKKLSDAMRDVELLKEKLTGLELAQEEANSLSNMVHSDNVRLEHDVAFL 737
Query: 371 KAVLDDTQKELHSTRGVIAGERARAFQLQYEVFHLKQRLQSMENRASTPR 222
KAVLDDTQKELHSTRGV+AGERARAFQLQ EVFHLKQRLQS+ENRA+TPR
Sbjct: 738 KAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAATPR 787
>pir||S03166 myosin heavy chain, gizzard smooth muscle [similarity] - chicken
gi|63634|emb|CAA29793.1| MHC (AA 1-1979) [Gallus gallus]
Length = 1979
Score = 45.1 bits (105), Expect = 6e-04
Identities = 36/135 (26%), Positives = 61/135 (44%), Gaps = 10/135 (7%)
Frame = -1
Query: 527 QEMEKKMADTLKEMESLREKLGSLEFSLEEANHLSNIVHSDNVRLEHDVAFLKAVLDDTQ 348
Q+++ K +D + L EK+ L+ +E L N S N++L DVA L + L DTQ
Sbjct: 1268 QDLQSKYSDGERVRTELNEKVHKLQIEVENVTSLLNEAESKNIKLTKDVATLGSQLQDTQ 1327
Query: 347 KELHSTRGVIAGERARAFQLQYEVFHLKQRL-------QSMENRASTPRTTISPCAMK-- 195
+ L + QL+ + L+++L Q++E ST +S K
Sbjct: 1328 ELLQEETRQKLNVTTKLRQLEDDKNSLQEQLDEEVEAKQNLERHISTLTIQLSDSKKKLQ 1387
Query: 194 -WIGSQKSKHVGKKK 153
+ + ++ GKKK
Sbjct: 1388 EFTATVETMEEGKKK 1402
>sp|P10587|MYHB_CHICK Myosin heavy chain, gizzard smooth muscle
Length = 1979
Score = 45.1 bits (105), Expect = 6e-04
Identities = 36/135 (26%), Positives = 61/135 (44%), Gaps = 10/135 (7%)
Frame = -1
Query: 527 QEMEKKMADTLKEMESLREKLGSLEFSLEEANHLSNIVHSDNVRLEHDVAFLKAVLDDTQ 348
Q+++ K +D + L EK+ L+ +E L N S N++L DVA L + L DTQ
Sbjct: 1268 QDLQSKYSDGERVRTELNEKVHKLQIEVENVTSLLNEAESKNIKLTKDVATLGSQLQDTQ 1327
Query: 347 KELHSTRGVIAGERARAFQLQYEVFHLKQRL-------QSMENRASTPRTTISPCAMK-- 195
+ L + QL+ + L+++L Q++E ST +S K
Sbjct: 1328 ELLQEETRQKLNVTTKLRQLEDDKNSLQEQLDEEVEAKQNLERHISTLTIQLSDSKKKLQ 1387
Query: 194 -WIGSQKSKHVGKKK 153
+ + ++ GKKK
Sbjct: 1388 EFTATVETMEEGKKK 1402
>pir||S43556 plasminogen-binding protein MLC36 - Streptococcus sp. (fragment)
gi|474768|emb|CAA83588.1| MLC36 [Streptococcus sp.
'group C']
Length = 454
Score = 40.4 bits (93), Expect = 0.014
Identities = 25/76 (32%), Positives = 42/76 (54%)
Frame = -1
Query: 527 QEMEKKMADTLKEMESLREKLGSLEFSLEEANHLSNIVHSDNVRLEHDVAFLKAVLDDTQ 348
+E+EK++ + LKE + L EKL + EFSL EA N + +L D LK L+ +
Sbjct: 89 EEIEKELGNKLKENQDLEEKLKNKEFSLGEALRYINELDLKLGQLNIDNIDLKHELEQEK 148
Query: 347 KELHSTRGVIAGERAR 300
++ + R + E+A+
Sbjct: 149 QKAEAYRQTLEAEKAK 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,145,922
Number of Sequences: 1393205
Number of extensions: 10182758
Number of successful extensions: 30249
Number of sequences better than 10.0: 270
Number of HSP's better than 10.0 without gapping: 28149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30071
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
