Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005563A_C01 KMC005563A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22584|RS14_LUPLU 40S RIBOSOMAL PROTEIN S14 gi|7440341|pir||T... 200 1e-50
sp|P19950|R141_MAIZE 40S RIBOSOMAL PROTEIN S14 (CLONE MCH1) gi|8... 198 5e-50
ref|NP_190826.1| putative ribosomal protein S14; protein id: At3... 197 8e-50
ref|NP_181158.1| 40S ribosomal protein S14; protein id: At2g3616... 197 8e-50
ref|NP_187758.1| putative 40S ribosomal protein s14; protein id:... 197 8e-50
>sp|O22584|RS14_LUPLU 40S RIBOSOMAL PROTEIN S14 gi|7440341|pir||T07974 ribosomal protein
S14 - yellow lupine gi|2565340|gb|AAB81972.1| ribosomal
protein S14 [Lupinus luteus]
Length = 150
Score = 200 bits (508), Expect = 1e-50
Identities = 102/105 (97%), Positives = 104/105 (98%)
Frame = -2
Query: 570 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRATGGNKTK 391
LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHI+LRATGGNKTK
Sbjct: 46 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTK 105
Query: 390 TPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 256
TPG GAQ+ALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL
Sbjct: 106 TPGRGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 150
>sp|P19950|R141_MAIZE 40S RIBOSOMAL PROTEIN S14 (CLONE MCH1) gi|82723|pir||A30097
ribosomal protein S14 (clone MCH1) - maize
Length = 149
Score = 198 bits (503), Expect = 5e-50
Identities = 99/105 (94%), Positives = 103/105 (97%)
Frame = -2
Query: 570 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRATGGNKTK 391
LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVA RCKELGITALHI+LRATGGNKTK
Sbjct: 45 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTK 104
Query: 390 TPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 256
TPGPGAQ+ALRALARSGMKIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct: 105 TPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149
>ref|NP_190826.1| putative ribosomal protein S14; protein id: At3g52580.1, supported
by cDNA: 9716., supported by cDNA: gi_16209653
[Arabidopsis thaliana] gi|27735232|sp|P42036|R143_ARATH
40S ribosomal protein S14-3 gi|7440340|pir||T08441
ribosomal protein S14, cytosolic - Arabidopsis thaliana
gi|4886269|emb|CAB43407.1| putative ribosomal protein
S14 [Arabidopsis thaliana] gi|16209654|gb|AAL14387.1|
AT3g52580/F22O6_40 [Arabidopsis thaliana]
gi|21618105|gb|AAM67155.1| putative ribosomal protein
S14 [Arabidopsis thaliana] gi|21700837|gb|AAM70542.1|
AT3g52580/F22O6_40 [Arabidopsis thaliana]
Length = 150
Score = 197 bits (501), Expect = 8e-50
Identities = 98/105 (93%), Positives = 103/105 (97%)
Frame = -2
Query: 570 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRATGGNKTK 391
LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVA RCKELGITA+H++LRATGGNKTK
Sbjct: 46 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTK 105
Query: 390 TPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 256
TPGPGAQ+ALRALARSGMKIGRIEDVTPIP+DSTRRK GRRGRRL
Sbjct: 106 TPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
>ref|NP_181158.1| 40S ribosomal protein S14; protein id: At2g36160.1, supported by
cDNA: 41471. [Arabidopsis thaliana]
gi|27734451|sp|Q9SIH0|R141_ARATH 40S ribosomal protein
S14-1 gi|25294663|pir||D84777 40S ribosomal protein S14
[imported] - Arabidopsis thaliana
gi|4678226|gb|AAD26971.1| 40S ribosomal protein S14
[Arabidopsis thaliana] gi|21593698|gb|AAM65665.1| 40S
ribosomal protein S14 [Arabidopsis thaliana]
Length = 150
Score = 197 bits (501), Expect = 8e-50
Identities = 98/105 (93%), Positives = 103/105 (97%)
Frame = -2
Query: 570 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRATGGNKTK 391
LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVA RCKELGITA+H++LRATGGNKTK
Sbjct: 46 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTK 105
Query: 390 TPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 256
TPGPGAQ+ALRALARSGMKIGRIEDVTPIP+DSTRRK GRRGRRL
Sbjct: 106 TPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
>ref|NP_187758.1| putative 40S ribosomal protein s14; protein id: At3g11510.1,
supported by cDNA: 7969. [Arabidopsis thaliana]
gi|27734448|sp|Q9CAX6|R142_ARATH 40S ribosomal protein
S14-2 gi|12322890|gb|AAG51428.1|AC008153_1 putative 40S
ribosomal protein s14; 67401-66292 [Arabidopsis
thaliana] gi|21595448|gb|AAM66102.1| putative 40S
ribosomal protein S14 [Arabidopsis thaliana]
Length = 150
Score = 197 bits (501), Expect = 8e-50
Identities = 98/105 (93%), Positives = 103/105 (97%)
Frame = -2
Query: 570 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIRLRATGGNKTK 391
LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVA RCKELGITA+H++LRATGGNKTK
Sbjct: 46 LSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTK 105
Query: 390 TPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 256
TPGPGAQ+ALRALARSGMKIGRIEDVTPIP+DSTRRK GRRGRRL
Sbjct: 106 TPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,534,410
Number of Sequences: 1393205
Number of extensions: 10537663
Number of successful extensions: 37459
Number of sequences better than 10.0: 263
Number of HSP's better than 10.0 without gapping: 34122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36889
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
