Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005561A_C01 KMC005561A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC62624.1| rac GTPase activating protein 1 [Lotus japonicus] 119 3e-26
ref|NP_738467.1| phosphatidylglycerophosphate synthase [Coryneba... 32 7.7
ref|XP_161176.1| hypothetical protein XP_161176 [Mus musculus] 31 10.0
gb|ZP_00109122.1| hypothetical protein [Nostoc punctiforme] 31 10.0
>gb|AAC62624.1| rac GTPase activating protein 1 [Lotus japonicus]
Length = 493
Score = 119 bits (298), Expect = 3e-26
Identities = 61/65 (93%), Positives = 62/65 (94%)
Frame = -2
Query: 584 LQDSSMPTGQAKISRSKSLPMSTSDIDKSFKYVIEFPVVGPAEKNRGTAIIGRINSRTEL 405
LQDSS+ TGQAKISRSKSL MSTSDIDKSFK VIEFPVVGPAEKNRGTAIIGRINSRTEL
Sbjct: 429 LQDSSIATGQAKISRSKSLQMSTSDIDKSFKNVIEFPVVGPAEKNRGTAIIGRINSRTEL 488
Query: 404 TEAWR 390
TEAWR
Sbjct: 489 TEAWR 493
>ref|NP_738467.1| phosphatidylglycerophosphate synthase [Corynebacterium efficiens
YS-314] gi|23493698|dbj|BAC18667.1|
phosphatidylglycerophosphate synthase [Corynebacterium
efficiens YS-314]
Length = 207
Score = 31.6 bits (70), Expect = 7.7
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 186 GNTQRPLYTLAILERAYACTPLCSSAIMQLTKRFIVTEIAIETWLEHQL--SSVIPAPQG 359
G P+ A++ A+ C + T ++ E I W QL +V+PA +G
Sbjct: 94 GKIADPIADKALMTTAFVCFNIIGILPWWATALIVIREFGITIWRFFQLRRGTVVPASKG 153
Query: 360 SKMK 371
KMK
Sbjct: 154 GKMK 157
>ref|XP_161176.1| hypothetical protein XP_161176 [Mus musculus]
Length = 280
Score = 31.2 bits (69), Expect = 10.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 122 RQTPKNKQKIHTKSQ*SLSRTWEHTKTSLHPCYPGKSLCMH 244
+ P ++++ KS+ WE K S+H CYP S MH
Sbjct: 187 KSLPIREEEMICKSKEINISGWEKPKVSMHTCYPSDSTQMH 227
>gb|ZP_00109122.1| hypothetical protein [Nostoc punctiforme]
Length = 1041
Score = 31.2 bits (69), Expect = 10.0
Identities = 18/49 (36%), Positives = 29/49 (58%)
Frame = +3
Query: 384 LSTPSFSQLCS*IYTPNDRSSPVLLCRPYYWKLDHVLETLVYIRSTHGK 530
LST S S IYTPND+ +L +P + + D +++Y++S+ GK
Sbjct: 737 LSTAYGSSQVSTIYTPNDQFYVILEVKPEFQR-DSTALSMLYVQSSTGK 784
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,439,190
Number of Sequences: 1393205
Number of extensions: 10370073
Number of successful extensions: 26984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26982
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
