Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005559A_C01 KMC005559A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC86403.1| heat shock protein [Lactobacillus sanfranciscensis] 34 1.4
gb|AAK11552.1| major surface protein 1a [Anaplasma marginale] 32 4.0
gb|AAG29248.1| major surface protein 1a [Anaplasma marginale] 32 4.0
ref|XP_221464.1| similar to type II transmembrane serine proteas... 32 4.0
gb|AAL83806.1|AF345867_1 major surface protein 1a [Anaplasma mar... 32 4.0
>emb|CAC86403.1| heat shock protein [Lactobacillus sanfranciscensis]
Length = 346
Score = 33.9 bits (76), Expect = 1.4
Identities = 30/113 (26%), Positives = 46/113 (40%)
Frame = -2
Query: 521 GSRDTTSQMPPQCETATVGFEQSALVHNSGQASLANDSGAVNGKQGYD*HSSLTVPIRRI 342
GS+ Q+P +AT+ E + L H + L SG V QGY R
Sbjct: 25 GSKALAEQLPIHVSSATIRNEMAVLSHQNFIEKLHTSSGRVPSNQGY-----------RY 73
Query: 341 QLSRNVSPKSLVSHHGKFNADHYRGYFRVIEDETIRIPNLWS*KIAQILGHVT 183
+ P L + ++ ++ G F+ I DE +R + A IL H+T
Sbjct: 74 YIDNLAKPAKLDTKRLEYISEMLDGSFQQI-DEIVR-------QSADILSHLT 118
>gb|AAK11552.1| major surface protein 1a [Anaplasma marginale]
Length = 622
Score = 32.3 bits (72), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 545 DSQVKQSTGSRDTTSQMPPQCETATVGFEQSALVHNSGQASLANDSGA 402
+S V +G T+SQ+ +A+ ++S++ SGQAS ++ SGA
Sbjct: 50 ESSVSSQSGQASTSSQLGTDSSSASGQQQESSVSSQSGQASTSSQSGA 97
>gb|AAG29248.1| major surface protein 1a [Anaplasma marginale]
Length = 623
Score = 32.3 bits (72), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 545 DSQVKQSTGSRDTTSQMPPQCETATVGFEQSALVHNSGQASLANDSGA 402
+S V +G T+SQ+ +A+ ++S++ SGQAS ++ SGA
Sbjct: 51 ESSVSSQSGQASTSSQLGTDSSSASGQQQESSVSSQSGQASTSSQSGA 98
>ref|XP_221464.1| similar to type II transmembrane serine protease 6; membrane-bound
mosaic serine proteinase matriptase-2 [Homo sapiens]
[Rattus norvegicus]
Length = 1094
Score = 32.3 bits (72), Expect = 4.0
Identities = 22/105 (20%), Positives = 47/105 (43%), Gaps = 7/105 (6%)
Frame = -3
Query: 424 LWLMTVALLMANKVMIDTHH*LCLSG-------ESSFPEM*VQNLLFLIMASSMQITTED 266
LW+ V++ + +++ LCL G E+ PE+ F+++ + E+
Sbjct: 941 LWMAIVSIFLCFTIVVIIS--LCLVGVTYIDEDENEMPELSSNKTFFIVLKIPEECANEE 998
Query: 265 ISESLRMKPLESLIYGVRKLHRFWDTSLLCTST*QTASINYHKKF 131
L K L + L+RF+ ++ + + + A++ YH +F
Sbjct: 999 ELHHLLTKRLTDMYRQSPALNRFFTSADIMDFSVENATVTYHLQF 1043
>gb|AAL83806.1|AF345867_1 major surface protein 1a [Anaplasma marginale]
Length = 200
Score = 32.3 bits (72), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 545 DSQVKQSTGSRDTTSQMPPQCETATVGFEQSALVHNSGQASLANDSGA 402
+S V +G T+SQ+ +A+ ++S++ SGQAS ++ SGA
Sbjct: 109 ESSVSSQSGQASTSSQLGTDSSSASGQQQESSVSSQSGQASTSSQSGA 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,825,222
Number of Sequences: 1393205
Number of extensions: 8665361
Number of successful extensions: 20619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20616
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
