Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005558A_C01 KMC005558A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23207.1|AC016795_20 putative ubiquitin carboxyl-terminal h... 37 0.21
gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UB... 37 0.21
gb|AAO22588.1| putative ubiquitin carboxyl-terminal hydrolase [A... 37 0.21
gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabido... 37 0.21
ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein... 37 0.21
>gb|AAF23207.1|AC016795_20 putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Length = 1124
Score = 36.6 bits (83), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -3
Query: 549 YIVNQNRHAFDKPVKIYN 496
Y NQNRHA++KPVKIYN
Sbjct: 1107 YAANQNRHAYEKPVKIYN 1124
>gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana]
gi|23296847|gb|AAN13185.1| putative ubiquitin-specific
protease UBP12 [Arabidopsis thaliana]
Length = 1115
Score = 36.6 bits (83), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -3
Query: 549 YIVNQNRHAFDKPVKIYN 496
Y NQNRHA++KPVKIYN
Sbjct: 1098 YAANQNRHAYEKPVKIYN 1115
>gb|AAO22588.1| putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]
Length = 1115
Score = 36.6 bits (83), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -3
Query: 549 YIVNQNRHAFDKPVKIYN 496
Y NQNRHA++KPVKIYN
Sbjct: 1098 YAANQNRHAYEKPVKIYN 1115
>gb|AAG42754.1|AF302663_1 ubiquitin-specific protease 12 [Arabidopsis thaliana]
Length = 1116
Score = 36.6 bits (83), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -3
Query: 549 YIVNQNRHAFDKPVKIYN 496
Y NQNRHA++KPVKIYN
Sbjct: 1099 YAANQNRHAYEKPVKIYN 1116
>ref|NP_568171.1| ubiquitin-specific protease 12 (UBP12); protein id: At5g06600.1,
supported by cDNA: gi_11993470 [Arabidopsis thaliana]
Length = 1116
Score = 36.6 bits (83), Expect = 0.21
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -3
Query: 549 YIVNQNRHAFDKPVKIYN 496
Y NQNRHA++KPVKIYN
Sbjct: 1099 YAANQNRHAYEKPVKIYN 1116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,653,239
Number of Sequences: 1393205
Number of extensions: 10593831
Number of successful extensions: 25684
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25678
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
