Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005553A_C02 KMC005553A_c02
(1075 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus] 443 e-123
emb|CAC10213.1| GTP-binding protein [Cicer arietinum] 443 e-123
sp|P41918|RANA_TOBAC GTP-binding nuclear protein RAN-A1 gi|49626... 443 e-123
sp|P54765|RANA_LOTJA GTP-binding nuclear protein RAN1A gi|137020... 441 e-122
ref|NP_200330.1| GTP-binding protein atran3, putative; protein i... 439 e-122
>gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]
Length = 221
Score = 443 bits (1140), Expect = e-123
Identities = 209/213 (98%), Positives = 212/213 (99%)
Frame = -1
Query: 1051 VDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 872
VDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD
Sbjct: 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
Query: 871 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 692
TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD
Sbjct: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
Query: 691 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 512
VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP
Sbjct: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
Query: 511 EVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 413
EVQID+AAQQQHEAELA AASQPLPDDDDDAF+
Sbjct: 189 EVQIDMAAQQQHEAELAAAASQPLPDDDDDAFE 221
>emb|CAC10213.1| GTP-binding protein [Cicer arietinum]
Length = 221
Score = 443 bits (1139), Expect = e-123
Identities = 208/213 (97%), Positives = 212/213 (98%)
Frame = -1
Query: 1051 VDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 872
VDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD
Sbjct: 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
Query: 871 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 692
TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD
Sbjct: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
Query: 691 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 512
VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP
Sbjct: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
Query: 511 EVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 413
EVQIDL AQQQHEAE+AQAA+QPLPDDDDDAF+
Sbjct: 189 EVQIDLVAQQQHEAEIAQAANQPLPDDDDDAFE 221
>sp|P41918|RANA_TOBAC GTP-binding nuclear protein RAN-A1 gi|496268|gb|AAA73563.1|
GTP-binding protein
Length = 221
Score = 443 bits (1139), Expect = e-123
Identities = 211/219 (96%), Positives = 214/219 (97%)
Frame = -1
Query: 1069 PSESANVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 890
P + A VDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI
Sbjct: 4 PGQQA-VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
Query: 889 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 710
RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL
Sbjct: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122
Query: 709 CGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 530
CGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES
Sbjct: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 182
Query: 529 PALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 413
PALAPPEVQIDLAAQQQHEAELA AASQPLPDDDD+ FD
Sbjct: 183 PALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221
>sp|P54765|RANA_LOTJA GTP-binding nuclear protein RAN1A gi|1370203|emb|CAA98187.1| RAN1A
[Lotus japonicus]
Length = 209
Score = 441 bits (1133), Expect = e-122
Identities = 209/209 (100%), Positives = 209/209 (100%)
Frame = -1
Query: 1039 NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 860
NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ
Sbjct: 1 NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 60
Query: 859 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 680
EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR
Sbjct: 61 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 120
Query: 679 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 500
QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI
Sbjct: 121 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 180
Query: 499 DLAAQQQHEAELAQAASQPLPDDDDDAFD 413
DLAAQQQHEAELAQAASQPLPDDDDDAFD
Sbjct: 181 DLAAQQQHEAELAQAASQPLPDDDDDAFD 209
>ref|NP_200330.1| GTP-binding protein atran3, putative; protein id: At5g55190.1,
supported by cDNA: gi_14596016, supported by cDNA:
gi_15215577, supported by cDNA: gi_2149050, supported by
cDNA: gi_2801432 [Arabidopsis thaliana]
gi|2149051|gb|AAB58478.1| small Ras-like GTP-binding
protein [Arabidopsis thaliana] gi|9758116|dbj|BAB08588.1|
small Ras-like GTP-binding protein [Arabidopsis thaliana]
gi|14596017|gb|AAK68736.1| small Ras-like GTP-binding
protein [Arabidopsis thaliana] gi|15215578|gb|AAK91334.1|
AT5g55190/MCO15_14 [Arabidopsis thaliana]
gi|21435991|gb|AAM51573.1| AT5g55190/MCO15_14
[Arabidopsis thaliana]
Length = 221
Score = 439 bits (1130), Expect = e-122
Identities = 208/213 (97%), Positives = 210/213 (97%)
Frame = -1
Query: 1051 VDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 872
VDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD
Sbjct: 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
Query: 871 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 692
TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD
Sbjct: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
Query: 691 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 512
VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFVESPALAPP
Sbjct: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPP 188
Query: 511 EVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 413
EVQIDLAAQQQHEAELA AASQPLPDDDDD F+
Sbjct: 189 EVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 938,814,303
Number of Sequences: 1393205
Number of extensions: 21804265
Number of successful extensions: 74700
Number of sequences better than 10.0: 2169
Number of HSP's better than 10.0 without gapping: 67255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72420
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64292115691
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
