Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005552A_C01 KMC005552A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195436.1| tubulin-like protein; protein id: At4g37190.1 [... 170 2e-41
dbj|BAC65401.1| OSJNBa0075N02.15 [Oryza sativa (japonica cultiva... 130 1e-29
ref|NP_719028.1| hypothetical protein [Shewanella oneidensis MR-... 35 0.99
ref|XP_156591.1| hypothetical protein XP_156591 [Mus musculus] 34 2.2
ref|NP_248779.1| hypothetical protein [Pseudomonas aeruginosa PA... 33 3.8
>ref|NP_195436.1| tubulin-like protein; protein id: At4g37190.1 [Arabidopsis
thaliana] gi|25407796|pir||D85439 tubulin-like protein
[imported] - Arabidopsis thaliana
gi|4006861|emb|CAB16779.1| tubulin-like protein
[Arabidopsis thaliana] gi|7270668|emb|CAB80385.1|
tubulin-like protein [Arabidopsis thaliana]
Length = 562
Score = 170 bits (430), Expect = 2e-41
Identities = 84/152 (55%), Positives = 116/152 (76%), Gaps = 3/152 (1%)
Frame = -1
Query: 689 SEGHRASVCKVKDTVDAAFQRAHTR--PMFCHLAVAPCPLPIPLPFPSIFANPVGRHGEL 516
SE A V +VK+ VDA++++A T+ P+FC+L+V+ CPLP+PLPFPSIF N VGR GE+
Sbjct: 411 SEDKEALVSEVKNAVDASYEQATTKGKPLFCNLSVSRCPLPVPLPFPSIFGNLVGRKGEI 470
Query: 515 IGGPMSSTSSKGSLDIHSIPMPARLRSSRAVLPLLESKLRNLNRFGTARGASGSELLRSW 336
+ P+S + +GSLD+HSIP+ R RSS A+LP LE+++ NL + G GA GS+++R+W
Sbjct: 471 LSSPVSDSLYRGSLDVHSIPVATRWRSSSAILPFLETRMGNLEKLGIQWGAMGSDVVRAW 530
Query: 335 GFGKEELEEMGEMLSKMVAALSPPQF-SSDSD 243
GFG+EEL+EM E LSKMV+ L+P F SSDSD
Sbjct: 531 GFGREELQEMRENLSKMVSELNPQFFESSDSD 562
>dbj|BAC65401.1| OSJNBa0075N02.15 [Oryza sativa (japonica cultivar-group)]
Length = 458
Score = 130 bits (328), Expect = 1e-29
Identities = 63/115 (54%), Positives = 81/115 (69%), Gaps = 1/115 (0%)
Frame = -1
Query: 584 CPLPIPLPFPSIFANPVGRHGELIGGPMSSTSSKGSLDIHSIPMPARLRSSRAVLPLLES 405
CPLP+PLPFPSIF +GRHGE++ + KGSLDI SIPM ARLRSS VLP +E
Sbjct: 344 CPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSTVLPFIER 403
Query: 404 KLRNLNRFGTARGASGSELLRSWGFGKEELEEMGEMLSKMVAALSPP-QFSSDSD 243
+ +L + G ARGA GS +LR WGFG+EE+++MGE L+K++ P +SDSD
Sbjct: 404 RSGSLQKHGVARGAIGSLVLRDWGFGREEVDDMGEHLAKLLRPFHPEMDLTSDSD 458
>ref|NP_719028.1| hypothetical protein [Shewanella oneidensis MR-1]
gi|24349714|gb|AAN56472.1|AE015784_5 hypothetical
protein [Shewanella oneidensis MR-1]
Length = 596
Score = 35.0 bits (79), Expect = 0.99
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = -1
Query: 488 SKGSLDIHSIPMPARLRSSR---AVLPLLESKLRNLNRFGTARGASGSELLRSWGF--GK 324
S+GS D +P PA R R AVL ES LNR+GT G R +GF G
Sbjct: 121 SRGSADNAELPNPASQREKRQFNAVLNGCESSWDYLNRYGTFTG-----FFREYGFSGGT 175
Query: 323 EELEEMGEMLSKMVAAL 273
+E E+ +AA+
Sbjct: 176 GSWKEFSELNGNSIAAV 192
>ref|XP_156591.1| hypothetical protein XP_156591 [Mus musculus]
Length = 397
Score = 33.9 bits (76), Expect = 2.2
Identities = 22/66 (33%), Positives = 33/66 (49%)
Frame = +2
Query: 86 KNINQQNT*KSNKVKRHEQPAQHISEFVTISKF*NLFPQLLAVWNQEQCMQSNLNRKRTE 265
K+ QQ + K KV +P+ + + S+ N FP L A + QC + +RKR
Sbjct: 49 KHGKQQASHKKYKVSDKSKPSMTVEKDCLCSE--NTFPTLHAAYELTQCNVNTQSRKRHG 106
Query: 266 EDSKPQ 283
DS+PQ
Sbjct: 107 LDSRPQ 112
>ref|NP_248779.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11348763|pir||F83635 hypothetical protein PA0089
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9945914|gb|AAG03479.1|AE004447_12 hypothetical
protein [Pseudomonas aeruginosa PAO1]
Length = 348
Score = 33.1 bits (74), Expect = 3.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 512 LSIRHAGQLGWQRWMGKAGE*ARDRELLLDGRTWALYGHVEKQH 643
L ++ G+LG+ W+G G+ ARD L T + H EK+H
Sbjct: 304 LGLQGGGRLGFNTWLGDPGQDARDLLLARQYATARPHEHKEKEH 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,539,307
Number of Sequences: 1393205
Number of extensions: 15268267
Number of successful extensions: 49187
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 44405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48475
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
