Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005551A_C01 KMC005551A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187576.1| hypothetical protein; protein id: At3g09650.1 [... 192 2e-48
ref|NP_171809.1| hypothetical protein; protein id: At1g03100.1 [... 51 9e-06
dbj|BAC21367.1| hypothetical protein~similar to Arabidopsis thal... 42 0.007
ref|NP_177089.1| unknown protein; protein id: At1g69290.1 [Arabi... 37 0.22
pir||A96717 unknown protein, 45065-49536 [imported] - Arabidopsi... 37 0.22
>ref|NP_187576.1| hypothetical protein; protein id: At3g09650.1 [Arabidopsis
thaliana] gi|6682243|gb|AAF23295.1|AC016661_20
hypothetical protein [Arabidopsis thaliana]
Length = 778
Score = 192 bits (489), Expect = 2e-48
Identities = 91/105 (86%), Positives = 99/105 (93%)
Frame = -1
Query: 559 NSDSSVPPLKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMHS 380
+SD + P LKPDEGLLDTLADICVRAAFF+KALEI+ACMEENGIPPNKTK+ +IYVEMHS
Sbjct: 671 SSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTKYKKIYVEMHS 730
Query: 379 RMFTSKHASRARQDRRVERKRAAEAFKFWLGLPNSYYGSEWRLEP 245
RMFTSKHAS+AR DRRVERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 731 RMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775
>ref|NP_171809.1| hypothetical protein; protein id: At1g03100.1 [Arabidopsis
thaliana] gi|25518003|pir||H86161 F10O3.8 protein -
Arabidopsis thaliana gi|4587568|gb|AAD25799.1|AC006550_7
Contains PF|00637 Clathrin 7-fold repeat. EST
gb|AA721862 comes from this gene. [Arabidopsis thaliana]
Length = 793
Score = 51.2 bits (121), Expect = 9e-06
Identities = 26/84 (30%), Positives = 48/84 (56%)
Frame = -1
Query: 535 LKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMHSRMFTSKHA 356
+K D+ LLD + VR FF +A E+V ME+ + +K K+ ++++ H + K A
Sbjct: 710 MKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKYRMLFLKYHKTAYKGK-A 768
Query: 355 SRARQDRRVERKRAAEAFKFWLGL 284
+ + + +++++ A FK WLGL
Sbjct: 769 PKVQSESQLKKREAGLVFKKWLGL 792
>dbj|BAC21367.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 4,
hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 692
Score = 41.6 bits (96), Expect = 0.007
Identities = 18/84 (21%), Positives = 45/84 (53%)
Frame = -1
Query: 535 LKPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMHSRMFTSKHA 356
L D LLD L + A +F + +E+++ M + +K K+ ++++++H ++ + +
Sbjct: 608 LTVDRDLLDCLILNFLNAGYFARVMEVLSYMANRKMYCDKWKYKQVFLKLHKNLYRNLNL 667
Query: 355 SRARQDRRVERKRAAEAFKFWLGL 284
+ +++ +R AF+ W G+
Sbjct: 668 LHEKTEQQSKRIEDVRAFRSWAGV 691
>ref|NP_177089.1| unknown protein; protein id: At1g69290.1 [Arabidopsis thaliana]
Length = 129
Score = 36.6 bits (83), Expect = 0.22
Identities = 21/81 (25%), Positives = 39/81 (47%)
Frame = -1
Query: 526 DEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMHSRMFTSKHASRA 347
D L+D V+ FF A+++V +E I +K ++ + ++E H ++ K
Sbjct: 52 DHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRLPK----- 106
Query: 346 RQDRRVERKRAAEAFKFWLGL 284
+ R ++ + AFK W GL
Sbjct: 107 LRKRNYKKMESLVAFKNWAGL 127
>pir||A96717 unknown protein, 45065-49536 [imported] - Arabidopsis thaliana
gi|12325092|gb|AAG52501.1|AC018364_19 unknown protein;
45065-49536 [Arabidopsis thaliana]
Length = 860
Score = 36.6 bits (83), Expect = 0.22
Identities = 21/81 (25%), Positives = 39/81 (47%)
Frame = -1
Query: 526 DEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMHSRMFTSKHASRA 347
D L+D V+ FF A+++V +E I +K ++ + ++E H ++ K
Sbjct: 783 DHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRLPK----- 837
Query: 346 RQDRRVERKRAAEAFKFWLGL 284
+ R ++ + AFK W GL
Sbjct: 838 LRKRNYKKMESLVAFKNWAGL 858
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,765,865
Number of Sequences: 1393205
Number of extensions: 10620184
Number of successful extensions: 28861
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28841
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
