Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005549A_C01 KMC005549A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180232.1| putative beta-ketoacyl-CoA synthase; protein id... 105 3e-22
gb|AAC49186.1| beta-ketoacyl-CoA synthase 105 4e-22
emb|CAC01441.1| putative fatty acid elongase [Zea mays] 102 3e-21
gb|AAL67132.1| putative beta-ketoacyl-CoA synthase [Arabidopsis ... 100 2e-20
ref|NP_171918.1| putative beta-ketoacyl-CoA synthase; protein id... 100 2e-20
>ref|NP_180232.1| putative beta-ketoacyl-CoA synthase; protein id: At2g26640.1
[Arabidopsis thaliana] gi|25407838|pir||A84663 probable
beta-ketoacyl-CoA synthase [imported] - Arabidopsis
thaliana gi|2760830|gb|AAB95298.1| putative
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
gi|28392937|gb|AAO41904.1| putative beta-ketoacyl-CoA
synthase [Arabidopsis thaliana]
gi|28973575|gb|AAO64112.1| putative beta-ketoacyl-CoA
synthase [Arabidopsis thaliana]
Length = 509
Score = 105 bits (263), Expect = 3e-22
Identities = 45/55 (81%), Positives = 51/55 (91%)
Frame = -1
Query: 565 IKKGDKTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHEFPVHVPKVAKI 401
IKKGD+ WQIAFGSGFKCNS+VWRA+R++NP KEKNPWMDEIHEFPV VPKV+ I
Sbjct: 455 IKKGDRIWQIAFGSGFKCNSSVWRAVRSVNPKKEKNPWMDEIHEFPVEVPKVSTI 509
>gb|AAC49186.1| beta-ketoacyl-CoA synthase
Length = 521
Score = 105 bits (262), Expect = 4e-22
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = -1
Query: 565 IKKGDKTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHEFPVHVPKVAKIGS 395
I+KGD+TW I FGSGFKCNS VWRALR++NPA+EKNPWMDEI FPVHVPK+A I S
Sbjct: 465 IRKGDRTWMIGFGSGFKCNSVVWRALRSVNPAREKNPWMDEIENFPVHVPKIAPIAS 521
>emb|CAC01441.1| putative fatty acid elongase [Zea mays]
Length = 513
Score = 102 bits (254), Expect = 3e-21
Identities = 43/56 (76%), Positives = 51/56 (90%)
Frame = -1
Query: 565 IKKGDKTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHEFPVHVPKVAKIG 398
I+K D+ WQIAFGSGFKCNSAVW+ALRT+NPAKEK+PWMDEI FPV VPK++K+G
Sbjct: 456 IRKRDRIWQIAFGSGFKCNSAVWKALRTVNPAKEKSPWMDEIDNFPVDVPKISKVG 511
>gb|AAL67132.1| putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 523
Score = 99.8 bits (247), Expect = 2e-20
Identities = 45/61 (73%), Positives = 53/61 (86%), Gaps = 4/61 (6%)
Frame = -1
Query: 565 IKKGDKTWQIAFGSGFKCNSAVWRALRTINPAKEK----NPWMDEIHEFPVHVPKVAKIG 398
IK+GD+TWQIAFGSGFKCNSAVWRALRTI+P+KEK NPW+DEIHEFPV VP+ + +
Sbjct: 458 IKRGDRTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPWIDEIHEFPVPVPRTSPVT 517
Query: 397 S 395
S
Sbjct: 518 S 518
>ref|NP_171918.1| putative beta-ketoacyl-CoA synthase; protein id: At1g04220.1
[Arabidopsis thaliana] gi|7488037|pir||T00951 probable
3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
F20D22.1 - Arabidopsis thaliana
gi|3142289|gb|AAC16740.1| Strong similarity to
beta-keto-Coa synthase gb|U37088 from Simmondsia
chinensis. [Arabidopsis thaliana]
Length = 528
Score = 99.8 bits (247), Expect = 2e-20
Identities = 45/61 (73%), Positives = 53/61 (86%), Gaps = 4/61 (6%)
Frame = -1
Query: 565 IKKGDKTWQIAFGSGFKCNSAVWRALRTINPAKEK----NPWMDEIHEFPVHVPKVAKIG 398
IK+GD+TWQIAFGSGFKCNSAVWRALRTI+P+KEK NPW+DEIHEFPV VP+ + +
Sbjct: 463 IKRGDRTWQIAFGSGFKCNSAVWRALRTIDPSKEKKKKTNPWIDEIHEFPVPVPRTSPVT 522
Query: 397 S 395
S
Sbjct: 523 S 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,211,689
Number of Sequences: 1393205
Number of extensions: 10237384
Number of successful extensions: 21757
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 21087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21729
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
