Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005548A_C01 KMC005548A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO37828.1| HEN4 [Arabidopsis thaliana] 92 4e-18
ref|NP_201244.2| KH domain protein; protein id: At5g64390.1 [Ara... 92 4e-18
ref|NP_175569.1| KH domain protein; protein id: At1g51580.1 [Ara... 80 3e-14
ref|NP_179845.2| KH domain protein; protein id: At2g22600.1 [Ara... 59 4e-08
pir||E84614 probable RNA-binding protein [imported] - Arabidopsi... 59 5e-08
>gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 92.4 bits (228), Expect = 4e-18
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = -1
Query: 579 GRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVV 400
G G+ A VTNTTVEI V + S VYGE G N++++RQISGA V +++P GTS +V
Sbjct: 777 GSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV 836
Query: 399 ISGTPDPTFAAQSLLQAFIQSGQVS 325
ISGTPD T AAQ+LL AFI +G+ S
Sbjct: 837 ISGTPDQTQAAQNLLHAFILTGETS 861
>ref|NP_201244.2| KH domain protein; protein id: At5g64390.1 [Arabidopsis thaliana]
Length = 857
Score = 92.4 bits (228), Expect = 4e-18
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = -1
Query: 579 GRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVV 400
G G+ A VTNTTVEI V + S VYGE G N++++RQISGA V +++P GTS +V
Sbjct: 765 GSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV 824
Query: 399 ISGTPDPTFAAQSLLQAFIQSGQVS 325
ISGTPD T AAQ+LL AFI +G+ S
Sbjct: 825 ISGTPDQTQAAQNLLHAFILTGETS 849
>ref|NP_175569.1| KH domain protein; protein id: At1g51580.1 [Arabidopsis thaliana]
gi|25405483|pir||D96554 hypothetical protein F19C24.19
[imported] - Arabidopsis thaliana
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical
protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical
protein; 15135-12645 [Arabidopsis thaliana]
Length = 621
Score = 79.7 bits (195), Expect = 3e-14
Identities = 40/81 (49%), Positives = 55/81 (67%)
Frame = -1
Query: 573 GNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVIS 394
G+ +T+ VEIV+ + VYGE+ N++ I+Q+SGA+V V+DP AGT++G VV+S
Sbjct: 540 GSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVS 599
Query: 393 GTPDPTFAAQSLLQAFIQSGQ 331
GT D AQSLL AFI GQ
Sbjct: 600 GTSDQAHFAQSLLHAFILCGQ 620
>ref|NP_179845.2| KH domain protein; protein id: At2g22600.1 [Arabidopsis thaliana]
Length = 632
Score = 59.3 bits (142), Expect = 4e-08
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = -1
Query: 627 SENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGAS 448
S NG D+S R +G +V T+E+ V + S+YG DG VD ++QISGA+
Sbjct: 544 SSNG----DVSSLPPRSKG---VSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGAN 596
Query: 447 VTVYDPSAGTSQGKVVISGTPDPTFAAQSLLQAFI 343
V V DP+ ++ V+ISG P+ A SL+++ +
Sbjct: 597 VDVKDPTG--TEATVLISGNPEQARTAMSLIESIL 629
>pir||E84614 probable RNA-binding protein [imported] - Arabidopsis thaliana
gi|4314357|gb|AAD15568.1| putative RNA-binding protein
[Arabidopsis thaliana]
Length = 649
Score = 58.9 bits (141), Expect = 5e-08
Identities = 31/86 (36%), Positives = 51/86 (59%)
Frame = -1
Query: 600 LSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAG 421
L++ R +G +V T+E+ V + S+YG DG VD ++QISGA+V V DP+
Sbjct: 566 LAKQQRRSKG---VSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTG- 621
Query: 420 TSQGKVVISGTPDPTFAAQSLLQAFI 343
++ V+ISG P+ A SL+++ +
Sbjct: 622 -TEATVLISGNPEQARTAMSLIESIL 646
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,061,988
Number of Sequences: 1393205
Number of extensions: 11531776
Number of successful extensions: 25668
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 24836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25659
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
