Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005545A_C01 KMC005545A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64269.1| unknown [Arabidopsis thaliana] 66 3e-10
ref|NP_566165.2| expressed protein; protein id: At3g02170.1, sup... 66 3e-10
gb|AAL07210.1| unknown protein [Arabidopsis thaliana] 66 3e-10
ref|NP_197062.1| putative protein; protein id: At5g15580.1 [Arab... 62 4e-09
ref|NP_177556.1| unknown protein; protein id: At1g74160.1 [Arabi... 58 1e-07
>gb|AAM64269.1| unknown [Arabidopsis thaliana]
Length = 442
Score = 66.2 bits (160), Expect = 3e-10
Identities = 33/72 (45%), Positives = 45/72 (61%)
Frame = -3
Query: 559 KGKQLLDDLCTKIDKLQHKNRNLNLAHEDEKLTSLLWEDLTQQPTTCAECFSEIPNVVLD 380
K +QLL LC++ID+LQ N N L ++E ++WEDL Q E E P +VLD
Sbjct: 370 KEEQLLQTLCSEIDRLQQNNSNCILEDDEE---DIIWEDLQSQSMNLKEFEGETPGIVLD 426
Query: 379 IERLIFKDLITE 344
IER+IF+DL+ E
Sbjct: 427 IERMIFRDLVNE 438
>ref|NP_566165.2| expressed protein; protein id: At3g02170.1, supported by cDNA:
gi_15810132 [Arabidopsis thaliana]
gi|6041800|gb|AAF02120.1|AC009755_13 unknown protein
[Arabidopsis thaliana]
gi|6513917|gb|AAF14821.1|AC011664_3 unknown protein
[Arabidopsis thaliana] gi|23297751|gb|AAN13017.1| unknown
protein [Arabidopsis thaliana]
Length = 905
Score = 66.2 bits (160), Expect = 3e-10
Identities = 33/72 (45%), Positives = 45/72 (61%)
Frame = -3
Query: 559 KGKQLLDDLCTKIDKLQHKNRNLNLAHEDEKLTSLLWEDLTQQPTTCAECFSEIPNVVLD 380
K +QLL LC++ID+LQ N N L ++E ++WEDL Q E E P +VLD
Sbjct: 833 KEEQLLQTLCSEIDRLQQNNSNCILEDDEE---DIIWEDLQSQSMNLKEFEGETPGIVLD 889
Query: 379 IERLIFKDLITE 344
IER+IF+DL+ E
Sbjct: 890 IERMIFRDLVNE 901
>gb|AAL07210.1| unknown protein [Arabidopsis thaliana]
Length = 905
Score = 66.2 bits (160), Expect = 3e-10
Identities = 33/72 (45%), Positives = 45/72 (61%)
Frame = -3
Query: 559 KGKQLLDDLCTKIDKLQHKNRNLNLAHEDEKLTSLLWEDLTQQPTTCAECFSEIPNVVLD 380
K +QLL LC++ID+LQ N N L ++E ++WEDL Q E E P +VLD
Sbjct: 833 KEEQLLQTLCSEIDRLQQNNSNCILEDDEE---DIIWEDLQSQSMNLKEFEGETPGIVLD 889
Query: 379 IERLIFKDLITE 344
IER+IF+DL+ E
Sbjct: 890 IERMIFRDLVNE 901
>ref|NP_197062.1| putative protein; protein id: At5g15580.1 [Arabidopsis thaliana]
gi|11358126|pir||T51536 hypothetical protein T20K14_190 -
Arabidopsis thaliana gi|9755813|emb|CAC01757.1| putative
protein [Arabidopsis thaliana]
Length = 927
Score = 62.4 bits (150), Expect = 4e-09
Identities = 35/74 (47%), Positives = 47/74 (63%)
Frame = -3
Query: 559 KGKQLLDDLCTKIDKLQHKNRNLNLAHEDEKLTSLLWEDLTQQPTTCAECFSEIPNVVLD 380
+G++LL LC++ID+LQ ++ + L +DE L+WEDL E E P +VLD
Sbjct: 837 RGEELLQTLCSEIDRLQDNSKCI-LDEDDE---DLIWEDLQSHGMNWKEIEGETPGLVLD 892
Query: 379 IERLIFKDLITEAV 338
IERLIFKDLI E V
Sbjct: 893 IERLIFKDLIGEVV 906
>ref|NP_177556.1| unknown protein; protein id: At1g74160.1 [Arabidopsis thaliana]
gi|25406317|pir||G96769 unknown protein F9E11.1
[imported] - Arabidopsis thaliana
gi|12323815|gb|AAG51874.1|AC079678_4 unknown protein;
20090-16103 [Arabidopsis thaliana]
Length = 1028
Score = 57.8 bits (138), Expect = 1e-07
Identities = 34/98 (34%), Positives = 54/98 (54%), Gaps = 4/98 (4%)
Frame = -3
Query: 568 RKLKGKQLLDDLCTKIDKLQH----KNRNLNLAHEDEKLTSLLWEDLTQQPTTCAECFSE 401
+ + +QLL +LC+ I+ Q ++ N L ED+ L S+L ED+T + A+ E
Sbjct: 927 KAVSAQQLLKELCSAIETQQKQATKRSENFLLEEEDDFLKSILAEDVTIRSGNWADFSGE 986
Query: 400 IPNVVLDIERLIFKDLITEAVRG*VANHSGKHYRKPQL 287
+ +VLD+ERL+FKDL+ E V + K R+ L
Sbjct: 987 MSGLVLDVERLVFKDLVNEIVHAETSRLQAKSGRRRTL 1024
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,540,212
Number of Sequences: 1393205
Number of extensions: 8377361
Number of successful extensions: 18196
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18165
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
