Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005543A_C01 KMC005543A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65324.1| unknown [Arabidopsis thaliana] 168 4e-41
ref|NP_564051.1| expressed protein; protein id: At1g18450.1, sup... 166 2e-40
gb|AAM53244.1|AF507912_1 actin-related protein 4 [Arabidopsis th... 164 7e-40
ref|NP_177531.1| putative actin; protein id: At1g73910.1 [Arabid... 158 5e-38
gb|AAM53245.1|AF507913_1 actin-related protein 5 [Arabidopsis th... 156 2e-37
>gb|AAM65324.1| unknown [Arabidopsis thaliana]
Length = 441
Score = 168 bits (426), Expect = 4e-41
Identities = 81/111 (72%), Positives = 95/111 (84%), Gaps = 3/111 (2%)
Frame = +3
Query: 249 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID---QMDIDEADNAEKNSAS 419
MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSV+GA+D MD+D D+ + NS S
Sbjct: 1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVD-VDSTKTNSNS 59
Query: 420 GTELTNSDKAKGKRKLYVGSQSLGYRRDHMEVLSPLQDGIVADWDIVDSIW 572
T S+K KGKRKLYVGSQ++ YRRDHMEVLSP++DGIV+DWD+VD+IW
Sbjct: 60 EDSKTESEKEKGKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIW 110
>ref|NP_564051.1| expressed protein; protein id: At1g18450.1, supported by cDNA:
38419. [Arabidopsis thaliana]
gi|21489918|tpg|DAA00027.1| TPA: actin-related protein
4; AtARP4 [Arabidopsis thaliana]
Length = 441
Score = 166 bits (420), Expect = 2e-40
Identities = 80/111 (72%), Positives = 94/111 (84%), Gaps = 3/111 (2%)
Frame = +3
Query: 249 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID---QMDIDEADNAEKNSAS 419
MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSV+GA+D MD+D D+ + NS S
Sbjct: 1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVD-VDSTKTNSNS 59
Query: 420 GTELTNSDKAKGKRKLYVGSQSLGYRRDHMEVLSPLQDGIVADWDIVDSIW 572
T S+K K KRKLYVGSQ++ YRRDHMEVLSP++DGIV+DWD+VD+IW
Sbjct: 60 EDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIW 110
>gb|AAM53244.1|AF507912_1 actin-related protein 4 [Arabidopsis thaliana]
Length = 442
Score = 164 bits (415), Expect = 7e-40
Identities = 79/110 (71%), Positives = 93/110 (83%), Gaps = 3/110 (2%)
Frame = +3
Query: 252 YGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID---QMDIDEADNAEKNSASG 422
YGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSV+GA+D MD+D D+ + NS S
Sbjct: 3 YGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVD-VDSTKTNSNSE 61
Query: 423 TELTNSDKAKGKRKLYVGSQSLGYRRDHMEVLSPLQDGIVADWDIVDSIW 572
T S+K K KRKLYVGSQ++ YRRDHMEVLSP++DGIV+DWD+VD+IW
Sbjct: 62 DSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIW 111
>ref|NP_177531.1| putative actin; protein id: At1g73910.1 [Arabidopsis thaliana]
gi|25406303|pir||F96766 protein actin F2P9.22 [imported]
- Arabidopsis thaliana
gi|12325147|gb|AAG52523.1|AC016662_17 putative actin;
83885-82991 [Arabidopsis thaliana]
gi|21489922|tpg|DAA00029.1| TPA: actin-related protein
5; AtARP5 [Arabidopsis thaliana]
Length = 145
Score = 158 bits (399), Expect = 5e-38
Identities = 78/110 (70%), Positives = 90/110 (80%), Gaps = 2/110 (1%)
Frame = +3
Query: 249 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID--QMDIDEADNAEKNSASG 422
MYGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSVVGAID MDID+A N +++
Sbjct: 1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDA--- 57
Query: 423 TELTNSDKAKGKRKLYVGSQSLGYRRDHMEVLSPLQDGIVADWDIVDSIW 572
SDK KGKRKLY GSQ+L +RRD ME+LSP +DGIV DWD+VD++W
Sbjct: 58 ---KESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVW 104
>gb|AAM53245.1|AF507913_1 actin-related protein 5 [Arabidopsis thaliana]
Length = 146
Score = 156 bits (394), Expect = 2e-37
Identities = 77/109 (70%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Frame = +3
Query: 252 YGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAID--QMDIDEADNAEKNSASGT 425
YGGDEVSAIV+DLGSHTCKAGYAGEDAPKAVFPSVVGAID MDID+A N +++
Sbjct: 3 YGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDA---- 58
Query: 426 ELTNSDKAKGKRKLYVGSQSLGYRRDHMEVLSPLQDGIVADWDIVDSIW 572
SDK KGKRKLY GSQ+L +RRD ME+LSP +DGIV DWD+VD++W
Sbjct: 59 --KESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVW 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,079,463
Number of Sequences: 1393205
Number of extensions: 10594782
Number of successful extensions: 31910
Number of sequences better than 10.0: 923
Number of HSP's better than 10.0 without gapping: 29623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30969
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
