Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005542A_C01 KMC005542A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568688.1| putative protein; protein id: At5g47780.1, supp... 114 1e-24
dbj|BAB11325.1| emb|CAB71043.1~gene_id:MCA23.10~strong similarit... 114 1e-24
dbj|BAC22319.1| contains EST AU065171(E60238)~hypothetical prote... 112 5e-24
ref|NP_191672.1| putative protein; protein id: At3g61130.1, supp... 102 3e-21
emb|CAB81547.1| 68 kDa protein [Cicer arietinum] 96 3e-19
>ref|NP_568688.1| putative protein; protein id: At5g47780.1, supported by cDNA:
gi_15810326, supported by cDNA: gi_20259234 [Arabidopsis
thaliana] gi|15810327|gb|AAL07051.1| unknown protein
[Arabidopsis thaliana] gi|20259235|gb|AAM14333.1|
unknown protein [Arabidopsis thaliana]
Length = 616
Score = 114 bits (285), Expect = 1e-24
Identities = 45/62 (72%), Positives = 56/62 (89%)
Frame = -2
Query: 601 WHVLGLGYNTNVNPKDIERSAVIHYNGNLKPWLEISIPKFRSYWVKYVNYDHAYMRECNI 422
WH+LGLGYN +VN +DIER+AVIHYNGNLKPWLEI IP++R +W K+V+Y+H Y+RECNI
Sbjct: 555 WHILGLGYNPSVNQRDIERAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNI 614
Query: 421 NP 416
NP
Sbjct: 615 NP 616
>dbj|BAB11325.1| emb|CAB71043.1~gene_id:MCA23.10~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 615
Score = 114 bits (285), Expect = 1e-24
Identities = 45/62 (72%), Positives = 56/62 (89%)
Frame = -2
Query: 601 WHVLGLGYNTNVNPKDIERSAVIHYNGNLKPWLEISIPKFRSYWVKYVNYDHAYMRECNI 422
WH+LGLGYN +VN +DIER+AVIHYNGNLKPWLEI IP++R +W K+V+Y+H Y+RECNI
Sbjct: 554 WHILGLGYNPSVNQRDIERAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNI 613
Query: 421 NP 416
NP
Sbjct: 614 NP 615
>dbj|BAC22319.1| contains EST AU065171(E60238)~hypothetical protein~similar to
Arabidopsis thaliana chromosome 5,MCA23.10 [Oryza sativa
(japonica cultivar-group)]
Length = 649
Score = 112 bits (279), Expect = 5e-24
Identities = 45/63 (71%), Positives = 56/63 (88%)
Frame = -2
Query: 604 SWHVLGLGYNTNVNPKDIERSAVIHYNGNLKPWLEISIPKFRSYWVKYVNYDHAYMRECN 425
SWHVLGLGYN +V+ +DIER+AVIHYNGN+KPWLEI +PKFR+YW Y++YD ++RECN
Sbjct: 587 SWHVLGLGYNPHVSSRDIERAAVIHYNGNMKPWLEIGLPKFRNYWSAYLDYDQPFLRECN 646
Query: 424 INP 416
INP
Sbjct: 647 INP 649
>ref|NP_191672.1| putative protein; protein id: At3g61130.1, supported by cDNA:
gi_14517361 [Arabidopsis thaliana]
gi|11282349|pir||T47905 hypothetical protein T20K12.30 -
Arabidopsis thaliana gi|6850880|emb|CAB71043.1| putative
protein [Arabidopsis thaliana]
gi|7799777|emb|CAB91508.1| like glycosyl transferase 1
[Arabidopsis thaliana]
Length = 673
Score = 102 bits (255), Expect = 3e-21
Identities = 37/62 (59%), Positives = 53/62 (84%)
Frame = -2
Query: 604 SWHVLGLGYNTNVNPKDIERSAVIHYNGNLKPWLEISIPKFRSYWVKYVNYDHAYMRECN 425
+WHVLGLGYN +++ KDIE +AV+HYNGN+KPWLE+++ K+R YW KY+ +DH Y+R CN
Sbjct: 611 AWHVLGLGYNPSIDKKDIENAAVVHYNGNMKPWLELAMSKYRPYWTKYIKFDHPYLRRCN 670
Query: 424 IN 419
++
Sbjct: 671 LH 672
>emb|CAB81547.1| 68 kDa protein [Cicer arietinum]
Length = 591
Score = 96.3 bits (238), Expect = 3e-19
Identities = 37/62 (59%), Positives = 51/62 (81%)
Frame = -2
Query: 604 SWHVLGLGYNTNVNPKDIERSAVIHYNGNLKPWLEISIPKFRSYWVKYVNYDHAYMRECN 425
SWHVLGLGY+ +V+ +IE +AV+HYNGN+KPWLEI++ K+R YW KYV Y+H Y+R C
Sbjct: 527 SWHVLGLGYSPSVDRSEIENAAVVHYNGNMKPWLEIAMTKYRPYWSKYVKYNHPYLRNCK 586
Query: 424 IN 419
++
Sbjct: 587 LS 588
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,662,037
Number of Sequences: 1393205
Number of extensions: 10081136
Number of successful extensions: 21447
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 20761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21437
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
