Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005541A_C01 KMC005541A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thalian... 94 1e-18
dbj|BAC07382.1| OJ1641_C04.15 [Oryza sativa (japonica cultivar-g... 91 8e-18
dbj|BAB88998.1| P0401G10.6 [Oryza sativa (japonica cultivar-group)] 87 1e-16
ref|NP_564307.1| expressed protein; protein id: At1g28380.1, sup... 75 8e-13
ref|NP_564333.1| expressed protein; protein id: At1g29690.1, sup... 65 6e-10
>pir||T09892 hypothetical protein T22A6.120 - Arabidopsis thaliana
gi|5051771|emb|CAB45064.1| putative protein [Arabidopsis
thaliana] gi|7269279|emb|CAB79339.1| putative protein
[Arabidopsis thaliana]
Length = 606
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/54 (79%), Positives = 51/54 (93%)
Frame = -3
Query: 584 APKLLKFVDTTEMSRGPQENPGYWVVSGARLVVEKGRVSLRVKYSLLTMVLPDE 423
APKLLKFVDT+EM+RGPQE+PGYWVVSGARL+VEKG++SL+VKYSL T +L DE
Sbjct: 545 APKLLKFVDTSEMTRGPQESPGYWVVSGARLLVEKGKISLKVKYSLFTPILGDE 598
>dbj|BAC07382.1| OJ1641_C04.15 [Oryza sativa (japonica cultivar-group)]
gi|22202779|dbj|BAC07435.1| P0039H02.26 [Oryza sativa
(japonica cultivar-group)]
Length = 601
Score = 91.3 bits (225), Expect = 8e-18
Identities = 41/61 (67%), Positives = 52/61 (85%)
Frame = -3
Query: 581 PKLLKFVDTTEMSRGPQENPGYWVVSGARLVVEKGRVSLRVKYSLLTMVLPDEEMLDLDD 402
PKLLKFVD TEM RGPQ+ PGYWVVSGA+L +E+G++SLRVKYSLLT +LPD++ D+
Sbjct: 540 PKLLKFVDPTEMMRGPQDLPGYWVVSGAKLQLERGKISLRVKYSLLTAMLPDDDEFAFDE 599
Query: 401 Q 399
+
Sbjct: 600 E 600
>dbj|BAB88998.1| P0401G10.6 [Oryza sativa (japonica cultivar-group)]
Length = 573
Score = 87.4 bits (215), Expect = 1e-16
Identities = 40/54 (74%), Positives = 49/54 (90%)
Frame = -3
Query: 581 PKLLKFVDTTEMSRGPQENPGYWVVSGARLVVEKGRVSLRVKYSLLTMVLPDEE 420
PKLL+FVDTTEM RGPQ+ PGYWVVSGA+L +E+G++SLRVKYSLLT+ PD+E
Sbjct: 513 PKLLRFVDTTEMLRGPQDLPGYWVVSGAKLHLERGKISLRVKYSLLTVNSPDDE 566
>ref|NP_564307.1| expressed protein; protein id: At1g28380.1, supported by cDNA:
gi_16604598, supported by cDNA: gi_20465598 [Arabidopsis
thaliana] gi|25333976|pir||C86410 protein F3M18.18
[imported] - Arabidopsis thaliana
gi|6560762|gb|AAF16762.1|AC010155_15 F3M18.18
[Arabidopsis thaliana] gi|16604599|gb|AAL24092.1|
unknown protein [Arabidopsis thaliana]
gi|20465599|gb|AAM20282.1| unknown protein [Arabidopsis
thaliana]
Length = 612
Score = 74.7 bits (182), Expect = 8e-13
Identities = 32/52 (61%), Positives = 42/52 (80%)
Frame = -3
Query: 581 PKLLKFVDTTEMSRGPQENPGYWVVSGARLVVEKGRVSLRVKYSLLTMVLPD 426
PKLL VDT E+ RGP+E PGYWVV+GA+L VE G++S++ KYSLLT++ D
Sbjct: 558 PKLLSLVDTKEVMRGPEEQPGYWVVTGAKLCVEAGKISIKAKYSLLTVISED 609
>ref|NP_564333.1| expressed protein; protein id: At1g29690.1, supported by cDNA:
gi_15809819, supported by cDNA: gi_18650617 [Arabidopsis
thaliana] gi|25333974|pir||C86420 unknown protein,
124288-121737 [imported] - Arabidopsis thaliana
gi|12323548|gb|AAG51760.1|AC068667_39 unknown protein;
124288-121737 [Arabidopsis thaliana]
gi|18650618|gb|AAL75908.1| At1g29690/F15D2_24
[Arabidopsis thaliana]
Length = 561
Score = 65.1 bits (157), Expect = 6e-10
Identities = 29/45 (64%), Positives = 39/45 (86%)
Frame = -3
Query: 578 KLLKFVDTTEMSRGPQENPGYWVVSGARLVVEKGRVSLRVKYSLL 444
KL K VD++EM +GPQ+ PG+W+V+GA+L VEKG++ LRVKYSLL
Sbjct: 515 KLAKIVDSSEMLKGPQDLPGHWLVTGAKLGVEKGKIVLRVKYSLL 559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,118,547
Number of Sequences: 1393205
Number of extensions: 9910116
Number of successful extensions: 21262
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21203
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
