Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005540A_C01 KMC005540A_c01
(409 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176875.1| hypothetical protein; protein id: At1g67040.1 [... 50 5e-06
ref|XP_142745.2| similar to M104E myeloma immunoglobulin heavy c... 32 1.9
ref|XP_204725.1| similar to M104E myeloma immunoglobulin heavy c... 32 1.9
ref|NP_012627.1| Transcriptional activator of meiotic gene expre... 32 2.5
gb|EAA38251.1| GLP_15_2463_5954 [Giardia lamblia ATCC 50803] 31 3.2
>ref|NP_176875.1| hypothetical protein; protein id: At1g67040.1 [Arabidopsis
thaliana] gi|25404662|pir||C96694 hypothetical protein
F1O19.10 [imported] - Arabidopsis thaliana
gi|9755453|gb|AAF98214.1|AC007152_10 Hypothetical
protein [Arabidopsis thaliana]
Length = 826
Score = 50.4 bits (119), Expect = 5e-06
Identities = 41/122 (33%), Positives = 60/122 (48%), Gaps = 12/122 (9%)
Frame = -3
Query: 377 IGNTFNGNQLSPGSVLEASFS-----SSSLDESSGHGFHPYSMNYSYGQPEQWDHDIELS 213
IGN N SPGSVL+ASFS S+S D SG P +P + D DI L
Sbjct: 595 IGNA-NSEYTSPGSVLDASFSNESCFSNSFDNISGQMRLPL-------EPIEPDWDI-LE 645
Query: 212 DSATSFNNG-------MIGEILSQIPSALQCLHSFGRQFPRSKVNNVKDVLLNAELVLRI 54
D ATSF N I ++S + + L+CL + G + + ++V+++ EL++
Sbjct: 646 DYATSFKNSTSDGNYQAIASLISHVSNVLRCLSNTGLILTQQRFTIAREVIIHTELLVGT 705
Query: 53 AT 48
T
Sbjct: 706 TT 707
>ref|XP_142745.2| similar to M104E myeloma immunoglobulin heavy chain [Mus musculus]
Length = 240
Score = 32.0 bits (71), Expect = 1.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 299 ESSGHGFHPYSMNYSYGQPEQWDHDIELSDSATSFNNGMIGE 174
++SG+ F Y M++S+G+ +W DI + TS+N G+
Sbjct: 161 KASGYTFTDYYMHWSHGKSLEWIGDINPYNGGTSYNQKFKGK 202
>ref|XP_204725.1| similar to M104E myeloma immunoglobulin heavy chain [Mus musculus]
Length = 121
Score = 32.0 bits (71), Expect = 1.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -3
Query: 299 ESSGHGFHPYSMNYSYGQPEQWDHDIELSDSATSFNNGMIGE 174
++SG+ F Y M++S+G+ +W DI + TS+N G+
Sbjct: 42 KASGYTFTDYYMHWSHGKSLEWIGDINPYNGGTSYNQKFKGK 83
>ref|NP_012627.1| Transcriptional activator of meiotic gene expression.; Ime1p
[Saccharomyces cerevisiae]
gi|124393|sp|P21190|IME1_YEAST MEIOSIS-INDUCING PROTEIN
1 gi|1078104|pir||S57115 meiosis-inducing protein IME1 -
yeast (Saccharomyces cerevisiae)
gi|171754|gb|AAA86790.1| meiosis-inducing protein
gi|288582|emb|CAA36400.1| Ime1 protein [Saccharomyces
cerevisiae] gi|1015792|emb|CAA89622.1| ORF YJR094c
[Saccharomyces cerevisiae]
Length = 360
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 281 FHPYSMNYSYGQPEQWDHDIELSDSATSFNNGMIGEILSQIPSALQCLHSF-GRQFPRSK 105
F+PY+ NY+Y +P + +S S N + Q P +HSF R + K
Sbjct: 201 FYPYTTNYTYSKP------TNIHESINSKNTDSYSQYQDQFPPHTDNIHSFNNRHYSNHK 254
Query: 104 VNN 96
N
Sbjct: 255 STN 257
>gb|EAA38251.1| GLP_15_2463_5954 [Giardia lamblia ATCC 50803]
Length = 1163
Score = 31.2 bits (69), Expect = 3.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 368 TFNGNQLSPGSVLEASFSSSSLDESSGHGFHPYSMNYSYGQPEQWDHDIELSDSATS 198
T + + P ++L S S +E S P N P+ +HD+ LSD TS
Sbjct: 997 TVSKSMRKPQAILSNRLSHSDREEESTDAIPPVPPNEREPSPQLMEHDLALSDQDTS 1053
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,821,639
Number of Sequences: 1393205
Number of extensions: 6926644
Number of successful extensions: 17348
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 16920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17334
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
