Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005538A_C01 KMC005538A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF73754.1|AF149037_1 receptor-like protein kinase [Prunus du... 98 5e-42
gb|AAM13186.1| putative receptor-like protein kinase [Arabidopsi... 106 2e-22
ref|NP_180000.2| leucine-rich repeat transmembrane protein kinas... 106 2e-22
pir||B84634 probable receptor-like protein kinase [imported] - A... 106 2e-22
ref|NP_200623.1| leucine-rich repeat transmembrane protein kinas... 84 2e-15
>gb|AAF73754.1|AF149037_1 receptor-like protein kinase [Prunus dulcis]
Length = 221
Score = 98.2 bits (243), Expect(2) = 5e-42
Identities = 47/58 (81%), Positives = 53/58 (91%)
Frame = -3
Query: 465 RGLVRKNKVSRAIDSKIRDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIE 292
RGLV+KN+ + AID KIRDTGP++QMEEALKIGYLCTADLP KRPSM QIVGLLKD+E
Sbjct: 164 RGLVKKNRGASAIDPKIRDTGPDDQMEEALKIGYLCTADLPLKRPSMHQIVGLLKDME 221
Score = 95.1 bits (235), Expect(2) = 5e-42
Identities = 41/57 (71%), Positives = 50/57 (86%)
Frame = -2
Query: 613 EFSQQEFDTPSPKSDVYCFGVVLFEILTGKKPVGDDYPDEKKGTLVSWVQRTGQKEQ 443
EFSQ E+DTP+PKSDVYCFGVVLFE++TGKKP+GDDYP+EK TLVSWV+ +K +
Sbjct: 115 EFSQPEYDTPTPKSDVYCFGVVLFELITGKKPIGDDYPEEKDATLVSWVRGLVKKNR 171
>gb|AAM13186.1| putative receptor-like protein kinase [Arabidopsis thaliana]
Length = 853
Score = 106 bits (265), Expect = 2e-22
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = -3
Query: 465 RGLVRKNKVSRAIDSKIRDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPS 286
R LVRKN+ S+AID KI++TG EEQMEEALKIGYLCTADLPSKRPSMQQ+VGLLKDIEP
Sbjct: 791 RSLVRKNQASKAIDPKIQETGSEEQMEEALKIGYLCTADLPSKRPSMQQVVGLLKDIEPK 850
Query: 285 AN 280
+N
Sbjct: 851 SN 852
Score = 83.2 bits (204), Expect = 3e-15
Identities = 38/61 (62%), Positives = 47/61 (76%)
Frame = -2
Query: 613 EFSQQEFDTPSPKSDVYCFGVVLFEILTGKKPVGDDYPDEKKGTLVSWVQRTGQKEQSFK 434
EF Q E + P+PKSDVYCFGVVLFE++TGKKP+ DDY DEK LVSWV+ +K Q+ K
Sbjct: 742 EFLQPEHELPTPKSDVYCFGVVLFELMTGKKPIEDDYLDEKDTNLVSWVRSLVRKNQASK 801
Query: 433 S 431
+
Sbjct: 802 A 802
>ref|NP_180000.2| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g24230.1, supported by cDNA: gi_20260575
[Arabidopsis thaliana]
Length = 853
Score = 106 bits (265), Expect = 2e-22
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = -3
Query: 465 RGLVRKNKVSRAIDSKIRDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPS 286
R LVRKN+ S+AID KI++TG EEQMEEALKIGYLCTADLPSKRPSMQQ+VGLLKDIEP
Sbjct: 791 RSLVRKNQASKAIDPKIQETGSEEQMEEALKIGYLCTADLPSKRPSMQQVVGLLKDIEPK 850
Query: 285 AN 280
+N
Sbjct: 851 SN 852
Score = 83.2 bits (204), Expect = 3e-15
Identities = 38/61 (62%), Positives = 47/61 (76%)
Frame = -2
Query: 613 EFSQQEFDTPSPKSDVYCFGVVLFEILTGKKPVGDDYPDEKKGTLVSWVQRTGQKEQSFK 434
EF Q E + P+PKSDVYCFGVVLFE++TGKKP+ DDY DEK LVSWV+ +K Q+ K
Sbjct: 742 EFLQPEHELPTPKSDVYCFGVVLFELMTGKKPIEDDYLDEKDTNLVSWVRSLVRKNQASK 801
Query: 433 S 431
+
Sbjct: 802 A 802
>pir||B84634 probable receptor-like protein kinase [imported] - Arabidopsis
thaliana gi|4115383|gb|AAD03384.1| putative
receptor-like protein kinase [Arabidopsis thaliana]
Length = 809
Score = 106 bits (265), Expect = 2e-22
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = -3
Query: 465 RGLVRKNKVSRAIDSKIRDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPS 286
R LVRKN+ S+AID KI++TG EEQMEEALKIGYLCTADLPSKRPSMQQ+VGLLKDIEP
Sbjct: 747 RSLVRKNQASKAIDPKIQETGSEEQMEEALKIGYLCTADLPSKRPSMQQVVGLLKDIEPK 806
Query: 285 AN 280
+N
Sbjct: 807 SN 808
Score = 83.2 bits (204), Expect = 3e-15
Identities = 38/61 (62%), Positives = 47/61 (76%)
Frame = -2
Query: 613 EFSQQEFDTPSPKSDVYCFGVVLFEILTGKKPVGDDYPDEKKGTLVSWVQRTGQKEQSFK 434
EF Q E + P+PKSDVYCFGVVLFE++TGKKP+ DDY DEK LVSWV+ +K Q+ K
Sbjct: 698 EFLQPEHELPTPKSDVYCFGVVLFELMTGKKPIEDDYLDEKDTNLVSWVRSLVRKNQASK 757
Query: 433 S 431
+
Sbjct: 758 A 758
>ref|NP_200623.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g58150.1, supported by cDNA: gi_20268687
[Arabidopsis thaliana] gi|8777316|dbj|BAA96906.1|
receptor-like protein kinase [Arabidopsis thaliana]
gi|20268688|gb|AAM14048.1| putative receptor protein
kinase [Arabidopsis thaliana] gi|21689849|gb|AAM67568.1|
putative receptor protein kinase [Arabidopsis thaliana]
Length = 785
Score = 83.6 bits (205), Expect = 2e-15
Identities = 39/60 (65%), Positives = 51/60 (85%)
Frame = -3
Query: 465 RGLVRKNKVSRAIDSKIRDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPS 286
RGLVR+ + RAID +++T PE+++ EA+KIGYLCTADLP KRP+MQQ+VGLLKDI P+
Sbjct: 725 RGLVRQGQGLRAIDPTMQETVPEDEIAEAVKIGYLCTADLPWKRPTMQQVVGLLKDISPN 784
Score = 43.9 bits (102), Expect = 0.002
Identities = 23/58 (39%), Positives = 36/58 (61%)
Frame = -2
Query: 604 QQEFDTPSPKSDVYCFGVVLFEILTGKKPVGDDYPDEKKGTLVSWVQRTGQKEQSFKS 431
Q+ +P+ +SDVY FGVVL E+++GKKP GD LV+WV+ ++ Q ++
Sbjct: 688 QERNASPTLESDVYSFGVVLLELVSGKKPEGD---------LVNWVRGLVRQGQGLRA 736
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,065,597
Number of Sequences: 1393205
Number of extensions: 10664821
Number of successful extensions: 34670
Number of sequences better than 10.0: 1557
Number of HSP's better than 10.0 without gapping: 32261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34644
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
