Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005537A_C01 KMC005537A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198930.1| putative protein; protein id: At5g41140.1 [Arab... 84 7e-16
ref|NP_176519.1| hypothetical protein; protein id: At1g63300.1 [... 79 3e-14
ref|NP_200041.1| hyaluronan mediated motility receptor-like prot... 79 3e-14
gb|AAG13633.1|AC078840_24 putative myosin [Oryza sativa (japonic... 74 1e-12
gb|AAO72668.1| putative myosin [Oryza sativa (japonica cultivar-... 74 1e-12
>ref|NP_198930.1| putative protein; protein id: At5g41140.1 [Arabidopsis thaliana]
gi|9759160|dbj|BAB09716.1| contains similarity to myosin
heavy chain~gene_id:MEE6.21 [Arabidopsis thaliana]
Length = 983
Score = 84.3 bits (207), Expect = 7e-16
Identities = 41/62 (66%), Positives = 53/62 (85%)
Frame = -3
Query: 498 EDSHLTDILTELSSLKERNNSMESELKEMQERYSEISLKFAEVEGERQMLVMTVRNLKSV 319
+ +L D++ E++SL+E+N ME+ELKEMQERYSEISL+FAEVEGERQ LVMTVR LK+
Sbjct: 921 KSDNLQDLVNEVASLREQNGLMETELKEMQERYSEISLRFAEVEGERQQLVMTVRYLKNA 980
Query: 318 QK 313
+K
Sbjct: 981 KK 982
>ref|NP_176519.1| hypothetical protein; protein id: At1g63300.1 [Arabidopsis thaliana]
gi|25404418|pir||H96658 hypothetical protein F9N12.8
[imported] - Arabidopsis thaliana
gi|12324352|gb|AAG52144.1|AC022355_5 hypothetical
protein; 26634-22760 [Arabidopsis thaliana]
Length = 1029
Score = 79.0 bits (193), Expect = 3e-14
Identities = 39/62 (62%), Positives = 50/62 (79%)
Frame = -3
Query: 498 EDSHLTDILTELSSLKERNNSMESELKEMQERYSEISLKFAEVEGERQMLVMTVRNLKSV 319
E+ + ++ E+ SL+E N SME ELKEM+ERYSEISL+FAEVEGERQ LVM VRNLK+
Sbjct: 967 ENEDIGVLVAEIESLRECNGSMEMELKEMRERYSEISLRFAEVEGERQQLVMIVRNLKNA 1026
Query: 318 QK 313
++
Sbjct: 1027 KR 1028
Score = 30.8 bits (68), Expect = 9.6
Identities = 13/42 (30%), Positives = 26/42 (60%)
Frame = -3
Query: 474 LTELSSLKERNNSMESELKEMQERYSEISLKFAEVEGERQML 349
L +++ L+ + S+E+ELK+ E +SE + E+E + + L
Sbjct: 532 LVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETL 573
>ref|NP_200041.1| hyaluronan mediated motility receptor-like protein; protein id:
At5g52280.1 [Arabidopsis thaliana]
Length = 853
Score = 79.0 bits (193), Expect = 3e-14
Identities = 39/62 (62%), Positives = 51/62 (81%)
Frame = -3
Query: 498 EDSHLTDILTELSSLKERNNSMESELKEMQERYSEISLKFAEVEGERQMLVMTVRNLKSV 319
++ +L+ + EL+ K +N+SME ELKEM+ERYSEISL+FAEVEGERQ LVM VRNLK+
Sbjct: 791 KEENLSKLSDELAYCKNKNSSMERELKEMEERYSEISLRFAEVEGERQQLVMAVRNLKNG 850
Query: 318 QK 313
+K
Sbjct: 851 KK 852
>gb|AAG13633.1|AC078840_24 putative myosin [Oryza sativa (japonica cultivar-group)]
Length = 951
Score = 73.6 bits (179), Expect = 1e-12
Identities = 39/61 (63%), Positives = 45/61 (72%)
Frame = -3
Query: 504 DIEDSHLTDILTELSSLKERNNSMESELKEMQERYSEISLKFAEVEGERQMLVMTVRNLK 325
D D+ + EL LKERN ++E ELKE+ RYSEISLKFAEVEGERQ LVMTVR LK
Sbjct: 888 DRRDAAHDQSVKELEILKERNTALEEELKELHGRYSEISLKFAEVEGERQQLVMTVRALK 947
Query: 324 S 322
+
Sbjct: 948 N 948
>gb|AAO72668.1| putative myosin [Oryza sativa (japonica cultivar-group)]
Length = 982
Score = 73.6 bits (179), Expect = 1e-12
Identities = 39/61 (63%), Positives = 45/61 (72%)
Frame = -3
Query: 504 DIEDSHLTDILTELSSLKERNNSMESELKEMQERYSEISLKFAEVEGERQMLVMTVRNLK 325
D D+ + EL LKERN ++E ELKE+ RYSEISLKFAEVEGERQ LVMTVR LK
Sbjct: 919 DRRDAAHDQSVKELEILKERNTALEEELKELHGRYSEISLKFAEVEGERQQLVMTVRALK 978
Query: 324 S 322
+
Sbjct: 979 N 979
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,007,000
Number of Sequences: 1393205
Number of extensions: 7581345
Number of successful extensions: 23353
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 21975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23319
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
