Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005536A_C01 KMC005536A_c01
(893 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla] 202 6e-51
dbj|BAA84603.1| oxidosqualene cyclase [Allium macrostemon] 200 2e-50
dbj|BAB83253.1| cycloartenol synthase [Costus speciosus] 200 3e-50
dbj|BAA33460.1| Cycloartenol Synthase [Panax ginseng] 199 5e-50
dbj|BAA33462.1| Oxidosqualene Cyclase [Panax ginseng] 196 5e-49
>dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla]
Length = 757
Score = 202 bits (514), Expect = 6e-51
Identities = 93/119 (78%), Positives = 109/119 (91%)
Frame = -2
Query: 892 RRACEFLLSKQLLSGGWGESYLSCELKVYTNLEGNKSHLVNTAWAMLALIEGGQAERDPT 713
R+AC+FLLSKQL SGGWGESYLSC+ KVY+++EGN+SH+VNT WAMLALIE GQAERDPT
Sbjct: 639 RKACDFLLSKQLPSGGWGESYLSCQNKVYSHVEGNRSHVVNTGWAMLALIEAGQAERDPT 698
Query: 712 PLHRAAKVLINSQMENGEFPQQEIMGVYNQTGVVNYSAYRNIFPIWALGEYRNRVLLCP 536
PLHRAA+VLINSQMENG+FPQ+EIMGV+N+ ++ Y+AYRNIFPIWALGEYR RVL P
Sbjct: 699 PLHRAARVLINSQMENGDFPQEEIMGVFNRNCMITYAAYRNIFPIWALGEYRCRVLQAP 757
>dbj|BAA84603.1| oxidosqualene cyclase [Allium macrostemon]
Length = 762
Score = 200 bits (509), Expect = 2e-50
Identities = 93/116 (80%), Positives = 106/116 (91%)
Frame = -2
Query: 892 RRACEFLLSKQLLSGGWGESYLSCELKVYTNLEGNKSHLVNTAWAMLALIEGGQAERDPT 713
R+AC+FLLSKQL SGGWGESYLSC+ KVYTNLEGN++H VNT+WAMLALI+ GQA+RD
Sbjct: 641 RKACDFLLSKQLKSGGWGESYLSCQEKVYTNLEGNRAHAVNTSWAMLALIDAGQAQRDAE 700
Query: 712 PLHRAAKVLINSQMENGEFPQQEIMGVYNQTGVVNYSAYRNIFPIWALGEYRNRVL 545
PLHRAAKVLIN QMENGEFPQQEIMGV+N+ +++YSAYRNIFPIWALGEYR RVL
Sbjct: 701 PLHRAAKVLINMQMENGEFPQQEIMGVFNRNCMISYSAYRNIFPIWALGEYRTRVL 756
>dbj|BAB83253.1| cycloartenol synthase [Costus speciosus]
Length = 759
Score = 200 bits (508), Expect = 3e-50
Identities = 92/116 (79%), Positives = 104/116 (89%)
Frame = -2
Query: 892 RRACEFLLSKQLLSGGWGESYLSCELKVYTNLEGNKSHLVNTAWAMLALIEGGQAERDPT 713
R+AC+FLLSKQ+ SGGWGESYLSC+ KVYTNLEGN++H VNT WAMLALI+ GQ ERDP
Sbjct: 639 RKACDFLLSKQVASGGWGESYLSCQNKVYTNLEGNRAHAVNTGWAMLALIDAGQGERDPK 698
Query: 712 PLHRAAKVLINSQMENGEFPQQEIMGVYNQTGVVNYSAYRNIFPIWALGEYRNRVL 545
PLHRAAKVLIN QMENGEFPQQEIMGV+N+ +++YS YRNIFPIWALGEYR RVL
Sbjct: 699 PLHRAAKVLINMQMENGEFPQQEIMGVFNKNCMISYSEYRNIFPIWALGEYRRRVL 754
>dbj|BAA33460.1| Cycloartenol Synthase [Panax ginseng]
Length = 758
Score = 199 bits (506), Expect = 5e-50
Identities = 92/119 (77%), Positives = 108/119 (90%)
Frame = -2
Query: 892 RRACEFLLSKQLLSGGWGESYLSCELKVYTNLEGNKSHLVNTAWAMLALIEGGQAERDPT 713
R+AC+FLLSKQ+ SGGWGESYLSC+ KVYTNLEGN+SH+VNT WAMLALI+ GQAERD T
Sbjct: 639 RKACDFLLSKQVASGGWGESYLSCQNKVYTNLEGNRSHVVNTGWAMLALIDAGQAERDAT 698
Query: 712 PLHRAAKVLINSQMENGEFPQQEIMGVYNQTGVVNYSAYRNIFPIWALGEYRNRVLLCP 536
PLHRAAK+LINSQMENG+FPQ+EIMGV+++ ++ Y+AYRNIFPIWALGEYR RVL P
Sbjct: 699 PLHRAAKLLINSQMENGDFPQEEIMGVFDKNCMITYAAYRNIFPIWALGEYRCRVLQGP 757
>dbj|BAA33462.1| Oxidosqualene Cyclase [Panax ginseng]
Length = 780
Score = 196 bits (497), Expect = 5e-49
Identities = 91/116 (78%), Positives = 106/116 (90%)
Frame = -2
Query: 892 RRACEFLLSKQLLSGGWGESYLSCELKVYTNLEGNKSHLVNTAWAMLALIEGGQAERDPT 713
RRAC+FLLSKQL SGGWGESYLSC+ KVYT++EGN SH+ NT WAMLALIE GQA+RDP+
Sbjct: 652 RRACDFLLSKQLGSGGWGESYLSCQNKVYTSIEGNISHVANTGWAMLALIEAGQAQRDPS 711
Query: 712 PLHRAAKVLINSQMENGEFPQQEIMGVYNQTGVVNYSAYRNIFPIWALGEYRNRVL 545
PLHRAAKVL+NSQM+NG FPQQEI+GV+N+ +++YSAYRNIFPIWALGEY NRVL
Sbjct: 712 PLHRAAKVLMNSQMKNGVFPQQEIVGVFNKNCMISYSAYRNIFPIWALGEYLNRVL 767
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 773,421,990
Number of Sequences: 1393205
Number of extensions: 17119685
Number of successful extensions: 37268
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 35452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37166
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48775691475
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
