Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005535A_C01 KMC005535A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum] 167 9e-41
gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota] 161 7e-39
gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana taba... 159 3e-38
gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana taba... 159 3e-38
ref|NP_564554.1| polyadenylate-binding protein (PABP), putative;... 154 6e-37
>gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 167 bits (423), Expect = 9e-41
Identities = 88/110 (80%), Positives = 96/110 (87%)
Frame = -3
Query: 593 LPIRDPVGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQ 414
LP +GQPMPI LA+ALANAP EQQRTMLGE+LYPLVDQLEH+ AAKVTGMLLEMDQ
Sbjct: 372 LPRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQ 431
Query: 413 PEVLHLIESPDALKAKVAEALDVLRNVAQQQANNPADQLASLSLNDNLAS 264
EVLHL+ESP+ALKAKVAEA++VLRNV QQ NPADQLASLSLNDNL S
Sbjct: 432 TEVLHLLESPEALKAKVAEAMEVLRNV--QQTTNPADQLASLSLNDNLVS 479
>gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 161 bits (407), Expect = 7e-39
Identities = 86/110 (78%), Positives = 93/110 (84%)
Frame = -3
Query: 593 LPIRDPVGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQ 414
LP +GQPMPI ALA+ALANAP +QQRTMLGE LYPLVDQLEHD AAKVTGMLLEMDQ
Sbjct: 552 LPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLLEMDQ 611
Query: 413 PEVLHLIESPDALKAKVAEALDVLRNVAQQQANNPADQLASLSLNDNLAS 264
EVLHL+ESPDALKAKVAEA+DVLRNV+Q N ADQL LSLN+NL S
Sbjct: 612 TEVLHLLESPDALKAKVAEAMDVLRNVSQP---NVADQLGGLSLNENLVS 658
>gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 159 bits (402), Expect = 3e-38
Identities = 82/111 (73%), Positives = 99/111 (88%), Gaps = 1/111 (0%)
Frame = -3
Query: 593 LPIRDP-VGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMD 417
+P+RD + QP+P+ ALATALAN+ +QRTMLGE LYPLV+QLE ++AAKVTGMLLEMD
Sbjct: 220 MPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMD 279
Query: 416 QPEVLHLIESPDALKAKVAEALDVLRNVAQQQANNPADQLASLSLNDNLAS 264
Q EVLHL+ESP+ALKAKVAEA++VLRNV+QQQ++NPADQLASLSLND L S
Sbjct: 280 QTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPADQLASLSLNDGLVS 330
>gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 159 bits (402), Expect = 3e-38
Identities = 82/111 (73%), Positives = 99/111 (88%), Gaps = 1/111 (0%)
Frame = -3
Query: 593 LPIRDP-VGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMD 417
+P+RD + QP+P+ ALATALAN+ +QRTMLGE LYPLV+QLE ++AAKVTGMLLEMD
Sbjct: 539 MPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMD 598
Query: 416 QPEVLHLIESPDALKAKVAEALDVLRNVAQQQANNPADQLASLSLNDNLAS 264
Q EVLHL+ESP+ALKAKVAEA++VLRNV+QQQ++NPADQLASLSLND L S
Sbjct: 599 QTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPADQLASLSLNDGLVS 649
>ref|NP_564554.1| polyadenylate-binding protein (PABP), putative; protein id:
At1g49760.1, supported by cDNA: gi_13877632, supported
by cDNA: gi_17978684 [Arabidopsis thaliana]
gi|25294313|pir||C96534 probable Poly-A Binding Protein
[imported] - Arabidopsis thaliana
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding
Protein [Arabidopsis thaliana]
Length = 671
Score = 154 bits (390), Expect = 6e-37
Identities = 81/103 (78%), Positives = 89/103 (85%)
Frame = -3
Query: 578 PVGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLH 399
P QP+PI ALAT LANA EQQRTMLGE LYPLV+QLE +SAAKVTGMLLEMDQ EVLH
Sbjct: 567 PTSQPVPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLH 626
Query: 398 LIESPDALKAKVAEALDVLRNVAQQQANNPADQLASLSLNDNL 270
L+ESP+ALKAKV EA+DVLR+VAQQQA ADQLASLSL DN+
Sbjct: 627 LLESPEALKAKVTEAMDVLRSVAQQQAGGAADQLASLSLGDNI 669
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,078,244
Number of Sequences: 1393205
Number of extensions: 9524003
Number of successful extensions: 24376
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 23325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24286
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
