Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005533A_C01 KMC005533A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566145.1| expressed protein; protein id: At3g01670.1, sup... 66 3e-10
gb|AAF01550.1|AC009325_20 unknown protein [Arabidopsis thaliana] 66 3e-10
ref|NP_186817.1| unknown protein; protein id: At3g01680.1 [Arabi... 65 5e-10
gb|AAC69242.1| Wnt-4 protein [Heliocidaris erythrogramma] 32 8.2
>ref|NP_566145.1| expressed protein; protein id: At3g01670.1, supported by cDNA:
gi_16648950 [Arabidopsis thaliana]
gi|16648951|gb|AAL24327.1| Unknown protein [Arabidopsis
thaliana]
Length = 822
Score = 66.2 bits (160), Expect = 3e-10
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = -2
Query: 597 YKGE-TGWALLIKGPFVVAVGHGTTVLKTVAEFEKWKELVIKKGFEFAFKEYLDKVSSSL 421
Y GE GW L+ K ++ G + +AEF +W+ + KGF A ++L +
Sbjct: 725 YGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPTKGFLTALNDHL-LMRLPP 783
Query: 420 HICSHLQIPNINGKIPDTIECPECHRTMEVFISYKCC 310
H C+ +P G IP+ +EC EC RTME + Y+CC
Sbjct: 784 HHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCC 820
>gb|AAF01550.1|AC009325_20 unknown protein [Arabidopsis thaliana]
Length = 846
Score = 66.2 bits (160), Expect = 3e-10
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = -2
Query: 597 YKGE-TGWALLIKGPFVVAVGHGTTVLKTVAEFEKWKELVIKKGFEFAFKEYLDKVSSSL 421
Y GE GW L+ K ++ G + +AEF +W+ + KGF A ++L +
Sbjct: 749 YGGEGDGWGLVSKASDMMVRAKGNLFSRGLAEFNEWEVNIPTKGFLTALNDHL-LMRLPP 807
Query: 420 HICSHLQIPNINGKIPDTIECPECHRTMEVFISYKCC 310
H C+ +P G IP+ +EC EC RTME + Y+CC
Sbjct: 808 HHCTRFMLPETAGIIPNEVECTECRRTMEKYYLYQCC 844
>ref|NP_186817.1| unknown protein; protein id: At3g01680.1 [Arabidopsis thaliana]
gi|6016725|gb|AAF01551.1|AC009325_21 unknown protein
[Arabidopsis thaliana]
Length = 740
Score = 65.5 bits (158), Expect = 5e-10
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Frame = -2
Query: 600 SYKGETGWALLIKGPFVVAVGHGTTVLKTVAEFEK-WKELVIKKGFEFAFKEYL--DKVS 430
SY GWALL KGP +V + HG + +T++ +++ WK V KG+ A ++ + +
Sbjct: 627 SYDKLGGWALLSKGPEIVMIAHGA-IERTMSVYDRTWKTHVPTKGYTKAMSDHHHDEVLR 685
Query: 429 SSLHICSHLQ--IPNINGKIPDTIECPECHRTMEVFISYKCCHN 304
+ C H I +G+IP+ + C EC R ME ++S+ CCH+
Sbjct: 686 ETGKPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCCHD 729
>gb|AAC69242.1| Wnt-4 protein [Heliocidaris erythrogramma]
Length = 252
Score = 31.6 bits (70), Expect = 8.2
Identities = 17/69 (24%), Positives = 29/69 (41%)
Frame = -2
Query: 537 HGTTVLKTVAEFEKWKELVIKKGFEFAFKEYLDKVSSSLHICSHLQIPNINGKIPDTIEC 358
HG KT + + + +GF +E +++ S H C + ++C
Sbjct: 193 HGRRCNKTSKAIDGCELMCCGRGFNTHIEEVIERCSCKFHWCCY-------------VKC 239
Query: 357 PECHRTMEV 331
CHRT+EV
Sbjct: 240 RNCHRTVEV 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,818,737
Number of Sequences: 1393205
Number of extensions: 10430918
Number of successful extensions: 28080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28050
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
