Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005531A_C01 KMC005531A_c01
(846 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM91095.1| At1g68060/T23K23_9 [Arabidopsis thaliana] gi|2346... 74 3e-12
ref|NP_176973.1| unknown protein; protein id: At1g68060.1, suppo... 68 2e-10
ref|NP_178284.1| putative myosin heavy chain-like protein; prote... 57 3e-07
ref|NP_563959.1| expressed protein; protein id: At1g14840.1, sup... 54 3e-06
gb|AAL11578.1|AF424584_1 At1g14840/F10B6_9 [Arabidopsis thaliana... 54 3e-06
>gb|AAM91095.1| At1g68060/T23K23_9 [Arabidopsis thaliana]
gi|23463063|gb|AAN33201.1| At1g68060/T23K23_9
[Arabidopsis thaliana]
Length = 634
Score = 73.9 bits (180), Expect = 3e-12
Identities = 39/59 (66%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Frame = -1
Query: 846 MRREVASMEKEVAAMRIEKEQDSRSKRFSSVKGPMNSAQHQLVSGRNGAR-GGLTRSTQ 673
MRREVA+MEKEVAAMR+EK+QD+R+KRFS+ K P N+A Q+++GR R GGLT+STQ
Sbjct: 578 MRREVAAMEKEVAAMRVEKDQDARAKRFSNSKSPSNTA--QILAGRAAGRSGGLTKSTQ 634
>ref|NP_176973.1| unknown protein; protein id: At1g68060.1, supported by cDNA:
gi_18377699, supported by cDNA: gi_20465646 [Arabidopsis
thaliana] gi|25404695|pir||G96703 unknown protein,
30164-32998 [imported] - Arabidopsis thaliana
gi|12324091|gb|AAG52019.1|AC012563_29 unknown protein;
30164-32998 [Arabidopsis thaliana]
gi|18377700|gb|AAL67000.1| unknown protein [Arabidopsis
thaliana] gi|20465647|gb|AAM20292.1| unknown protein
[Arabidopsis thaliana]
Length = 622
Score = 67.8 bits (164), Expect = 2e-10
Identities = 35/58 (60%), Positives = 46/58 (78%)
Frame = -1
Query: 846 MRREVASMEKEVAAMRIEKEQDSRSKRFSSVKGPMNSAQHQLVSGRNGARGGLTRSTQ 673
MRREVA+MEKEVAAMR++K+QD+R+KR S+ K N+A Q+++ R R GLTRSTQ
Sbjct: 567 MRREVAAMEKEVAAMRVDKDQDNRAKRSSNTKPSSNTA--QILAARAAGRSGLTRSTQ 622
>ref|NP_178284.1| putative myosin heavy chain-like protein; protein id: At2g01750.1
[Arabidopsis thaliana] gi|25410929|pir||F84428 probable
myosin heavy chain-like protein [imported] - Arabidopsis
thaliana gi|4220474|gb|AAD12697.1| putative myosin heavy
chain-like protein [Arabidopsis thaliana]
Length = 629
Score = 57.4 bits (137), Expect = 3e-07
Identities = 35/60 (58%), Positives = 45/60 (74%), Gaps = 2/60 (3%)
Frame = -1
Query: 846 MRREVASMEKEVAAMRIE-KEQDSRSKRFS-SVKGPMNSAQHQLVSGRNGARGGLTRSTQ 673
MRREVA+MEKEV+AMR++ K DSR++R S + KG +A QL+SGR R G+TRSTQ
Sbjct: 572 MRREVAAMEKEVSAMRVDNKGSDSRTRRHSTNSKGASTTA--QLLSGRGSGRMGMTRSTQ 629
>ref|NP_563959.1| expressed protein; protein id: At1g14840.1, supported by cDNA:
gi_15983419 [Arabidopsis thaliana]
gi|25402784|pir||C86282 protein F10B6.24 [imported] -
Arabidopsis thaliana
gi|8778228|gb|AAF79237.1|AC006917_22 F10B6.24
[Arabidopsis thaliana]
Length = 604
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Frame = -1
Query: 846 MRREVASMEKEVAAMRI--EKEQDSRSKRFSSVKGPMNSAQHQLVSGRNGARGGLTRSTQ 673
MRREVA M KEVAAMR+ + +QDS+++R S KG N+A QL+SGR R G+TRSTQ
Sbjct: 549 MRREVAVMGKEVAAMRVVDKGQQDSKTRRLSVSKG--NTA--QLLSGRVSGRIGMTRSTQ 604
>gb|AAL11578.1|AF424584_1 At1g14840/F10B6_9 [Arabidopsis thaliana] gi|25090285|gb|AAN72269.1|
At1g14840/F10B6_9 [Arabidopsis thaliana]
Length = 396
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Frame = -1
Query: 846 MRREVASMEKEVAAMRI--EKEQDSRSKRFSSVKGPMNSAQHQLVSGRNGARGGLTRSTQ 673
MRREVA M KEVAAMR+ + +QDS+++R S KG N+A QL+SGR R G+TRSTQ
Sbjct: 341 MRREVAVMGKEVAAMRVVDKGQQDSKTRRLSVSKG--NTA--QLLSGRVSGRIGMTRSTQ 396
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 678,094,753
Number of Sequences: 1393205
Number of extensions: 13859051
Number of successful extensions: 32132
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 31030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32120
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
