Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005530A_C01 KMC005530A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565620.1| expressed protein; protein id: At2g26340.1, sup... 98 8e-20
pir||T00967 hypothetical protein At2g26340 [imported] - Arabidop... 98 8e-20
gb|EAA17062.1| CCAAT-box DNA binding protein subunit B, putative... 33 2.4
ref|NP_326122.1| LIPOPROTEIN [Mycoplasma pulmonis] gi|25376427|p... 32 5.3
ref|NP_702732.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.3
>ref|NP_565620.1| expressed protein; protein id: At2g26340.1, supported by cDNA:
gi_13899086, supported by cDNA: gi_20148410 [Arabidopsis
thaliana] gi|13899087|gb|AAK48965.1|AF370538_1 Unknown
protein [Arabidopsis thaliana]
gi|20148411|gb|AAM10096.1| unknown protein [Arabidopsis
thaliana] gi|20196945|gb|AAC14486.2| expressed protein
[Arabidopsis thaliana] gi|20197179|gb|AAM14958.1|
expressed protein [Arabidopsis thaliana]
Length = 230
Score = 98.2 bits (243), Expect = 8e-20
Identities = 55/97 (56%), Positives = 68/97 (69%), Gaps = 3/97 (3%)
Frame = -3
Query: 626 GNGKTAMNNVDDCLRSLEELDSLFLNASRNDPAASVKSMKAKISTALGALDSLLQTVPSD 447
G KTA ++VD CLR+LEELDSLFL ASR D A+V MK+++ TAL ALDSLLQTVPS
Sbjct: 134 GFSKTATDDVDRCLRALEELDSLFLRASRKDSNATVVLMKSQLGTALTALDSLLQTVPSQ 193
Query: 446 VLSKGKVIADSYRDQENVETKSLD---PELKQLESVL 345
VL KGK + + YR + S D E+KQL+S+L
Sbjct: 194 VLDKGKAMVEVYRSASEEDAGSDDLESSEIKQLQSIL 230
>pir||T00967 hypothetical protein At2g26340 [imported] - Arabidopsis thaliana
Length = 253
Score = 98.2 bits (243), Expect = 8e-20
Identities = 55/97 (56%), Positives = 68/97 (69%), Gaps = 3/97 (3%)
Frame = -3
Query: 626 GNGKTAMNNVDDCLRSLEELDSLFLNASRNDPAASVKSMKAKISTALGALDSLLQTVPSD 447
G KTA ++VD CLR+LEELDSLFL ASR D A+V MK+++ TAL ALDSLLQTVPS
Sbjct: 157 GFSKTATDDVDRCLRALEELDSLFLRASRKDSNATVVLMKSQLGTALTALDSLLQTVPSQ 216
Query: 446 VLSKGKVIADSYRDQENVETKSLD---PELKQLESVL 345
VL KGK + + YR + S D E+KQL+S+L
Sbjct: 217 VLDKGKAMVEVYRSASEEDAGSDDLESSEIKQLQSIL 253
>gb|EAA17062.1| CCAAT-box DNA binding protein subunit B, putative [Plasmodium
yoelii yoelii]
Length = 1365
Score = 33.5 bits (75), Expect = 2.4
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 247 NINCVLRFNHLGLRLHNLNYAESYSEVEKVCYHSTDSNCFNSGSKLFVS-TFSWSLYESA 423
+I V++ N ++ + Y +YS++ CY++ + N +NS +K S TFS S Y++
Sbjct: 297 DIKKVIKSNLEKIKRMLIQYVCNYSKIRTSCYYNDEQNHYNSRNKFVKSKTFSNSCYKNK 356
Query: 424 ITF 432
F
Sbjct: 357 NNF 359
>ref|NP_326122.1| LIPOPROTEIN [Mycoplasma pulmonis] gi|25376427|pir||C90548
lipoprotein [imported] - Mycoplasma pulmonis (strain UAB
CTIP) gi|14089705|emb|CAC13464.1| LIPOPROTEIN
[Mycoplasma pulmonis]
Length = 185
Score = 32.3 bits (72), Expect = 5.3
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Frame = +1
Query: 103 KIIKIHFYTRMSSVDGQSYFLLNRTEDKANRSSLKDDQKIKFF*TLLHNIN----CVLRF 270
K+ KI F+T S+ S FL++ ++ + S ++ Q K + N + + F
Sbjct: 2 KLKKIKFFTLFSTFALMSPFLISCSKQSQDNQSQQNTQDQKKTNNVQSNSDVAKELIKNF 61
Query: 271 N-HLGLRLHNLNYAESYSEVEKVCYHSTDSNCFNSGSKLFVSTFSWSLYESAITF 432
N G + LN + Y E K+ N F K F + + ++E A F
Sbjct: 62 NFKAGSEISKLNSEKYYEEFRKIFRQDPSKNVFEKTLKSFDALSKYLVFERAKVF 116
>ref|NP_702732.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|6562714|emb|CAB62853.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1212
Score = 32.3 bits (72), Expect = 5.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 449 DVLSKGKVIADSYRDQENVETKSLDPELKQ 360
D+L GK D+Y D EN E K+ D E+KQ
Sbjct: 622 DILQNGKDKGDNYIDVENYEMKNEDEEIKQ 651
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,467,635
Number of Sequences: 1393205
Number of extensions: 9297367
Number of successful extensions: 21822
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21811
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
