Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005528A_C01 KMC005528A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC70779.1| granule-bound glycogen (starch) synthase [Astraga... 143 8e-34
sp|Q43092|UGST_PEA Granule-bound glycogen [starch] synthase, chl... 132 2e-30
ref|NP_174566.1| starch synthase, putative; protein id: At1g3290... 120 1e-26
dbj|BAA82346.1| granule-bound starch synthase I [Phaseolus vulga... 115 2e-25
emb|CAC69955.1| granule-bound starch synthase [Pisum sativum] 106 1e-22
>gb|AAC70779.1| granule-bound glycogen (starch) synthase [Astragalus membranaceus]
Length = 607
Score = 143 bits (361), Expect = 8e-34
Identities = 79/123 (64%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
Frame = +2
Query: 110 MATVTASSYAVSRSACLNRHGRTDSAAAKVNSVTLGGHALVYDGLRSLNKLHVRSARAVK 289
MATVT S Y VSRSAC N GRT++ + L A Y GLRSLNKLHV++ARA K
Sbjct: 1 MATVTGS-YVVSRSACFNSQGRTEAKVNSPQKINLNSQAFTYVGLRSLNKLHVQTARATK 59
Query: 290 GLSSTASDGGAARGKASGEVVCG--MNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNGH 463
T+S A K ++VCG MNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNGH
Sbjct: 60 ----TSSSSLKATNKDLVKIVCGNGMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNGH 115
Query: 464 RVM 472
RVM
Sbjct: 116 RVM 118
>sp|Q43092|UGST_PEA Granule-bound glycogen [starch] synthase, chloroplast precursor
(GBSSI) gi|2129897|pir||S61504 glycogen(starch) synthase
(EC 2.4.1.11) isoform I precursor - garden pea
gi|385411|gb|AAB26591.1| granule-bound starch synthase
isoform I, GBSSI [Pisum sativum=peas, BC1/9RR, Peptide,
603 aa] gi|887571|emb|CAA61268.1| glycogen (starch)
synthase [Pisum sativum]
Length = 603
Score = 132 bits (331), Expect = 2e-30
Identities = 75/124 (60%), Positives = 87/124 (69%), Gaps = 3/124 (2%)
Frame = +2
Query: 110 MATVTASSYAVSRSACLNRHGRTDSAAAKVNSVTL---GGHALVYDGLRSLNKLHVRSAR 280
MAT+T SS +R+AC N GR SA +K+N + A GLRSLNKLHVR+AR
Sbjct: 1 MATITGSSMP-TRTACFNYQGR--SAESKLNLPQIHFNNNQAFPVLGLRSLNKLHVRTAR 57
Query: 281 AVKGLSSTASDGGAARGKASGEVVCGMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNG 460
A G S T+ K+ G++VCGM+LVFVGAEVGPWSKTGGLGDVLGGLPP LAGNG
Sbjct: 58 ATSGSSDTSE-------KSLGKIVCGMSLVFVGAEVGPWSKTGGLGDVLGGLPPVLAGNG 110
Query: 461 HRVM 472
HRVM
Sbjct: 111 HRVM 114
>ref|NP_174566.1| starch synthase, putative; protein id: At1g32900.1, supported by
cDNA: 7714., supported by cDNA: gi_20453076 [Arabidopsis
thaliana] gi|29337142|sp|Q9MAQ0|UGST_ARATH Granule-bound
glycogen [starch] synthase, chloroplast precursor
gi|25286748|pir||F86453 granule-bound starch synthase
[imported] - Arabidopsis thaliana
gi|6910568|gb|AAF31273.1|AC006424_2 granule-bound starch
synthase [Arabidopsis thaliana]
gi|20453077|gb|AAM19783.1| At1g32900/F9L11_8
[Arabidopsis thaliana] gi|21595154|gb|AAM66076.1| starch
synthase, putative [Arabidopsis thaliana]
gi|21703108|gb|AAM74496.1| At1g32900/F9L11_8
[Arabidopsis thaliana] gi|23506181|gb|AAN31102.1|
At1g32900/F9L11_8 [Arabidopsis thaliana]
Length = 610
Score = 120 bits (300), Expect = 1e-26
Identities = 65/123 (52%), Positives = 84/123 (67%), Gaps = 2/123 (1%)
Frame = +2
Query: 110 MATVTASSYAVSRSACLNRHGRTDSAAAKVNSVTLGGHALVYDGLRSLNKLHVRSARAVK 289
MATVTASS VSR++ N HG S+ + V +TL G +L + GLRS N + R+
Sbjct: 1 MATVTASSNFVSRTSLFNNHGA--SSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQA 58
Query: 290 GLSSTASDGGAARGKASGEVVC--GMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNGH 463
S S +++ K +G++VC GM+++F+GAEVGPWSKTGGLGDVLGGLPPALA GH
Sbjct: 59 KPVSAKSSKRSSKVKTAGKIVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGH 118
Query: 464 RVM 472
RVM
Sbjct: 119 RVM 121
>dbj|BAA82346.1| granule-bound starch synthase I [Phaseolus vulgaris]
Length = 606
Score = 115 bits (288), Expect = 2e-25
Identities = 65/122 (53%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = +2
Query: 110 MATVTASSYAVSRSACLNRHGRTDSAAAKVNSVTLGGHALVYDGLRSLNKLHVRSARAVK 289
MATV+ +S S+ A T++ ++L H L YDGLRSLNK+ VRS A K
Sbjct: 1 MATVSMASCVASKGAW-----STETKVKSSGQMSLNRHELKYDGLRSLNKVLVRSTHASK 55
Query: 290 -GLSSTASDGGAARGKASGEVVCGMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNGHR 466
G S A + R K ++ CGMNL+FVGAEV PWSKTGGLGDVLGGLP ALA +GHR
Sbjct: 56 MGSSLAAKSSKSGREKVLEKIECGMNLIFVGAEVAPWSKTGGLGDVLGGLPSALAEHGHR 115
Query: 467 VM 472
VM
Sbjct: 116 VM 117
>emb|CAC69955.1| granule-bound starch synthase [Pisum sativum]
Length = 613
Score = 106 bits (264), Expect = 1e-22
Identities = 65/126 (51%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Frame = +2
Query: 110 MATVTASSYAVSRSACLNRHGRTDSAAAKVNSVTLGG--HALVYDGLRSLNKLHV---RS 274
MATVTASS VSR++ +N T S K + LG A ++GLR LN L R+
Sbjct: 1 MATVTASSNIVSRTSHVNLP--TVSCEFKTAPMRLGSIRKANTHNGLRVLNSLDELLNRT 58
Query: 275 ARAVKGLSSTASDGGAARGKASGEVVCGMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAG 454
+KG+ S + G +VCGMNL+FVG EV PWSKTGGLGDVLGGLPPAL+
Sbjct: 59 PIKMKGVQSRKKGVQRKNVRPKGIIVCGMNLIFVGTEVAPWSKTGGLGDVLGGLPPALSA 118
Query: 455 NGHRVM 472
NGHRVM
Sbjct: 119 NGHRVM 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,332,443
Number of Sequences: 1393205
Number of extensions: 11198404
Number of successful extensions: 62886
Number of sequences better than 10.0: 692
Number of HSP's better than 10.0 without gapping: 48802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60528
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
