Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005527A_C01 KMC005527A_c01
(409 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08826.1|AC113335_6 Putative protein phosphatase 2C [Oryza ... 72 1e-12
ref|NP_567923.1| putative protein; protein id: At4g33500.1, supp... 68 2e-11
pir||T06001 hypothetical protein F17M5.260 - Arabidopsis thalian... 67 4e-11
ref|NP_201473.1| putative protein; protein id: At5g66720.1 [Arab... 45 2e-04
ref|NP_193391.1| hypothetical protein; protein id: At4g16580.1 [... 44 4e-04
>gb|AAM08826.1|AC113335_6 Putative protein phosphatase 2C [Oryza sativa (japonica
cultivar-group)]
Length = 496
Score = 72.4 bits (176), Expect = 1e-12
Identities = 33/55 (60%), Positives = 46/55 (83%)
Frame = -2
Query: 384 LVPQEIAKVLAKRAQEVGKSTSTRSPFADAAQAIGYVGYSGGKLDDVTVIVSVVQ 220
L P EIA+ LA +AQEVG+S + +PF+DAA A+GY+G+SGGKLDD+ V+VS+V+
Sbjct: 438 LKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGKLDDIAVVVSIVR 492
>ref|NP_567923.1| putative protein; protein id: At4g33500.1, supported by cDNA:
gi_15293236 [Arabidopsis thaliana]
gi|14334748|gb|AAK59552.1| unknown protein [Arabidopsis
thaliana] gi|15293237|gb|AAK93729.1| unknown protein
[Arabidopsis thaliana]
Length = 724
Score = 68.2 bits (165), Expect = 2e-11
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = -2
Query: 384 LVPQEIAKVLAKRAQEVGKSTSTRSPFADAAQAIGYVGYSGGKLDDVTVIVSVVQ 220
L PQ+IA+++A +AQEVG+S + R+PFADAA+ GY G+ GGKLD VTVI+S V+
Sbjct: 666 LEPQKIAELVAAKAQEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVIISFVK 720
>pir||T06001 hypothetical protein F17M5.260 - Arabidopsis thaliana
gi|4490317|emb|CAB38808.1| putative protein [Arabidopsis
thaliana] gi|7270298|emb|CAB80067.1| putative protein
[Arabidopsis thaliana]
Length = 1066
Score = 67.4 bits (163), Expect = 4e-11
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = -2
Query: 384 LVPQEIAKVLAKRAQEVGKSTSTRSPFADAAQAIGYVGYSGGKLDDVTVIVSVVQTR 214
L PQ+IA+++A +AQEVG+S + R+PFADAA+ GY G+ GGKLD VTVI+S + R
Sbjct: 649 LEPQKIAELVAAKAQEVGRSKTERTPFADAAKEEGYNGHKGGKLDAVTVIISFDRVR 705
>ref|NP_201473.1| putative protein; protein id: At5g66720.1 [Arabidopsis thaliana]
gi|8843730|dbj|BAA97278.1| contains similarity to
unknown protein~emb|CAB46038.1~gene_id:MSN2.11
[Arabidopsis thaliana] gi|22531134|gb|AAM97071.1|
putative protein [Arabidopsis thaliana]
gi|23198040|gb|AAN15547.1| putative protein [Arabidopsis
thaliana] gi|26449356|dbj|BAC41805.1| unknown protein
[Arabidopsis thaliana]
Length = 414
Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/54 (46%), Positives = 34/54 (62%)
Frame = -2
Query: 384 LVPQEIAKVLAKRAQEVGKSTSTRSPFADAAQAIGYVGYSGGKLDDVTVIVSVV 223
L P+ A+ +A+ A++ +SPFA AAQ GY Y GGKLDD+T +VS V
Sbjct: 359 LDPKGTAQKIAELARQRAVDKKRQSPFATAAQEAGY-RYYGGKLDDITAVVSYV 411
>ref|NP_193391.1| hypothetical protein; protein id: At4g16580.1 [Arabidopsis
thaliana] gi|25366932|pir||E85184 hypothetical protein
dl4315c [imported] - Arabidopsis thaliana
gi|5302796|emb|CAB46038.1| hypothetical protein
[Arabidopsis thaliana] gi|7268408|emb|CAB78700.1|
hypothetical protein [Arabidopsis thaliana]
Length = 335
Score = 44.3 bits (103), Expect = 4e-04
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = -2
Query: 378 PQEIAKVLAKRAQEVGKSTSTRSPFADAAQAIGYVGYSGGKLDDVTVIVSVV 223
PQ A+ +A A++ + + ++PF+ AAQ G+ Y GGKLDD+TV+VS V
Sbjct: 276 PQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGF-RYYGGKLDDITVVVSYV 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,052,716
Number of Sequences: 1393205
Number of extensions: 6571600
Number of successful extensions: 13937
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13917
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
