Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005525A_C01 KMC005525A_c01
(906 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200614.1| ATGP1; protein id: At5g58060.1, supported by cD... 360 1e-98
gb|AAD00116.1| NTGP1 [Nicotiana tabacum] 359 3e-98
ref|NP_200626.1| ATGP1-like protein; protein id: At5g58180.1 [Ar... 304 1e-81
dbj|BAC01213.1| putative ATGP1 [Oryza sativa (japonica cultivar-... 281 7e-75
ref|NP_012725.1| Synaptobrevin (v-SNARE) homolog with similarity... 191 2e-47
>ref|NP_200614.1| ATGP1; protein id: At5g58060.1, supported by cDNA: gi_13358229,
supported by cDNA: gi_14326499, supported by cDNA:
gi_4097560 [Arabidopsis thaliana]
gi|27805791|sp|Q9ZRD6|YK61_ARATH VAMP-like protein YKT61
(AtYKT61) (Geranylgeranylated protein 1) (AtGP1)
gi|4097561|gb|AAD00112.1| ATGP1 [Arabidopsis thaliana]
gi|9759531|dbj|BAB10997.1| ATGP1 [Arabidopsis thaliana]
gi|11762228|gb|AAG40392.1|AF325040_1 AT5g58060
[Arabidopsis thaliana]
gi|14326500|gb|AAK60295.1|AF385703_1 AT5g58060/k21l19_40
[Arabidopsis thaliana] gi|22137308|gb|AAM91499.1|
AT5g58060/k21l19_40 [Arabidopsis thaliana]
Length = 199
Score = 360 bits (925), Expect = 1e-98
Identities = 177/199 (88%), Positives = 186/199 (92%)
Frame = -1
Query: 879 MKITALLVLKCPGEGSDPVILANALDVSHFGYFQRSSVKEFIVFVGRTVASRTPQGQRQS 700
MKITALLVLKC E SDPVIL+NA DVSHFGYFQRSSVKEF+VFVGRTVASRTP QRQS
Sbjct: 1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQS 60
Query: 699 VQHEEYKVHAYNRNGLCALGFMDDHYPVRSAFSLLNKVLDEYQKSFGESWRNTQADSTQP 520
VQHEEYKVHAYNRNGLCA+GFMDDHYPVRSAFSLLN+VLDEYQKSFGESWR+ + DS QP
Sbjct: 61 VQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQP 120
Query: 519 WPYLNDALTKFQDPAEADKLMKIQKELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 340
WPYL +AL KFQDPAEADKL+KIQ+ELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS
Sbjct: 121 WPYLTEALNKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSM 180
Query: 339 ASQMFYKQAKKTNQCCTIL 283
ASQMFYKQAKKTN CCTIL
Sbjct: 181 ASQMFYKQAKKTNSCCTIL 199
>gb|AAD00116.1| NTGP1 [Nicotiana tabacum]
Length = 199
Score = 359 bits (922), Expect = 3e-98
Identities = 176/199 (88%), Positives = 185/199 (92%)
Frame = -1
Query: 879 MKITALLVLKCPGEGSDPVILANALDVSHFGYFQRSSVKEFIVFVGRTVASRTPQGQRQS 700
MKITAL+VLKC EGSDPVILANA DVSHFGYFQRSSVKEFIVFVGRTVA R P GQRQS
Sbjct: 1 MKITALMVLKCNPEGSDPVILANASDVSHFGYFQRSSVKEFIVFVGRTVAKRNPPGQRQS 60
Query: 699 VQHEEYKVHAYNRNGLCALGFMDDHYPVRSAFSLLNKVLDEYQKSFGESWRNTQADSTQP 520
VQHEEYKVH+YNRNGLCALGFMDDHYPVRSAFSLLN+VLDEY K+FGESW+ Q+D+ QP
Sbjct: 61 VQHEEYKVHSYNRNGLCALGFMDDHYPVRSAFSLLNQVLDEYLKNFGESWKTVQSDNAQP 120
Query: 519 WPYLNDALTKFQDPAEADKLMKIQKELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 340
WPYLN+AL KFQDPAEADKL KIQ+ELDETKIILHKTIDSVL RGEKLDSLVEKSSDLSA
Sbjct: 121 WPYLNEALAKFQDPAEADKLFKIQRELDETKIILHKTIDSVLERGEKLDSLVEKSSDLSA 180
Query: 339 ASQMFYKQAKKTNQCCTIL 283
ASQMFYKQAKKTN CCTIL
Sbjct: 181 ASQMFYKQAKKTNSCCTIL 199
>ref|NP_200626.1| ATGP1-like protein; protein id: At5g58180.1 [Arabidopsis thaliana]
gi|27805788|sp|Q9LVM9|YK62_ARATH VAMP-like protein YKT62
(AtYKT62) (ATGP1-like protein)
gi|8777319|dbj|BAA96909.1| ATGP1-like protein
[Arabidopsis thaliana]
Length = 199
Score = 304 bits (779), Expect = 1e-81
Identities = 153/201 (76%), Positives = 173/201 (85%), Gaps = 2/201 (0%)
Frame = -1
Query: 879 MKITALLVLKCPGEGSDPVILANALDVSHFGYFQ--RSSVKEFIVFVGRTVASRTPQGQR 706
MKITALLVLKC E +PVILAN D+S FG F RS+ +EFIVF+ RTVA RTP GQR
Sbjct: 1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQR 60
Query: 705 QSVQHEEYKVHAYNRNGLCALGFMDDHYPVRSAFSLLNKVLDEYQKSFGESWRNTQADST 526
QSV+HEEYKVHAYN NGLCA+GFMDDHYPVRSAFSLLN+VLD YQK +G++WR +S+
Sbjct: 61 QSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRFE--NSS 118
Query: 525 QPWPYLNDALTKFQDPAEADKLMKIQKELDETKIILHKTIDSVLARGEKLDSLVEKSSDL 346
QPWPYL +A KF+DPAEADKL+KIQ+ELDETKIILHKTID VLARGEKLDSLVEKSS+L
Sbjct: 119 QPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSEL 178
Query: 345 SAASQMFYKQAKKTNQCCTIL 283
S AS+MFYKQAKKTN CCT+L
Sbjct: 179 SLASKMFYKQAKKTNSCCTLL 199
>dbj|BAC01213.1| putative ATGP1 [Oryza sativa (japonica cultivar-group)]
Length = 236
Score = 281 bits (720), Expect = 7e-75
Identities = 148/211 (70%), Positives = 166/211 (78%), Gaps = 23/211 (10%)
Frame = -1
Query: 879 MKITALLVLKCPGEGS--------------DPVILANALDVSHFGYFQRSSVKEFIVFVG 742
MKITALLVLK G + V+LANA DVSHFG+FQR + +EFIVFV
Sbjct: 1 MKITALLVLKPSSSGGGASSSGGGGGSGGPEAVVLANATDVSHFGFFQRGAAREFIVFVA 60
Query: 741 RTVASRTPQGQRQSVQHEEYKVHAYNRNGLCALGFMDDHYPVRSAFSLLNKVLDEYQKSF 562
RTVA RT GQRQSVQHEEYKVH++NRNGLCA+ FMDDHYPVRSAFSLLNKVLDEYQK+F
Sbjct: 61 RTVAQRTQPGQRQSVQHEEYKVHSHNRNGLCAVAFMDDHYPVRSAFSLLNKVLDEYQKAF 120
Query: 561 GESWRNTQADST---QPWPYLNDALTKFQDPAEADKLMKIQKELDETKIILHKTIDSVLA 391
G+SW+ D+T Q WP+L DALTKFQDPAEADKLMKIQ++LDETKIILHKTI+SVL
Sbjct: 121 GDSWKAATKDATDAAQQWPFLTDALTKFQDPAEADKLMKIQRDLDETKIILHKTIESVLQ 180
Query: 390 RGEKLDSLVEKSSDLSAASQ------MFYKQ 316
RGE+LDSLVEKSSDLSAASQ + YKQ
Sbjct: 181 RGERLDSLVEKSSDLSAASQKLPTMEILYKQ 211
>ref|NP_012725.1| Synaptobrevin (v-SNARE) homolog with similarity to Sec22p, Snc1p,
and Snc2p, essential for endoplasmic reticulum-Golgi
transport; Ykt6p [Saccharomyces cerevisiae]
gi|549743|sp|P36015|YKT6_YEAST Hypothetical 22.7 kDa
protein in PAS1-MST1 intergenic region
gi|539092|pir||S38033 cell division control protein SLY2
homolog YKL196c - yeast (Saccharomyces cerevisiae)
gi|486349|emb|CAA82040.1| ORF YKL196c [Saccharomyces
cerevisiae] gi|913916|gb|AAB32050.1| p26, Ykt6, YKL196c
product=putative farnesylated VAMP homolog/v-SNARE
component of ER-Golgi docking complex [Saccharomyces
cerevisiae, Peptide, 200 aa]
Length = 200
Score = 191 bits (484), Expect = 2e-47
Identities = 100/202 (49%), Positives = 142/202 (69%), Gaps = 3/202 (1%)
Frame = -1
Query: 879 MKITALLVLKCPGEGSDPVILANALDVSHFGYFQRSSVKEFIVFVGRTVASRTPQGQRQS 700
M+I + V + GE + + L+ D+S FG+F+RSSV +F+ F TVASRT GQRQS
Sbjct: 1 MRIYYIGVFRSGGEKA--LELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQS 58
Query: 699 VQHEEYKVHAYNRN-GLCALGFMDDHYPVRSAFSLLNKVLDEYQKSFG-ESWRN-TQADS 529
++ Y H Y R+ G+C + D YPVR A++LLNK+LDEY + E W + T+ +
Sbjct: 59 IEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND 118
Query: 528 TQPWPYLNDALTKFQDPAEADKLMKIQKELDETKIILHKTIDSVLARGEKLDSLVEKSSD 349
L+ ++K+QDP++AD +MK+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS
Sbjct: 119 ALKMKQLDTYISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSES 178
Query: 348 LSAASQMFYKQAKKTNQCCTIL 283
L+A+S+MFYKQAKK+N CC I+
Sbjct: 179 LTASSKMFYKQAKKSNSCCIIM 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 761,550,753
Number of Sequences: 1393205
Number of extensions: 16380058
Number of successful extensions: 44248
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 42175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44197
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49363855696
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
