Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005523A_C01 KMC005523A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E86331 hypothetical protein F6F9.12 - Arabidopsis thaliana ... 153 2e-36
ref|NP_173412.1| unknown protein; protein id: At1g19835.1 [Arabi... 153 2e-36
ref|NP_175226.1| mysoin-like protein; protein id: At1g47900.1 [A... 151 6e-36
ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [A... 145 4e-34
emb|CAA18118.1| hypothetical protein (fragment) [Arabidopsis tha... 145 4e-34
>pir||E86331 hypothetical protein F6F9.12 - Arabidopsis thaliana
gi|10086489|gb|AAG12549.1|AC007797_9 Unknown Protein
[Arabidopsis thaliana]
Length = 1024
Score = 153 bits (386), Expect = 2e-36
Identities = 76/131 (58%), Positives = 103/131 (78%), Gaps = 1/131 (0%)
Frame = +2
Query: 212 MDRR-WPWKKKSSDKAVPEKVAVALDSSEASNQDSSKKPNYVQISVESYSHLTGLEDQVK 388
MDR+ WPWKKKSS+K +E +Q++ KKP+Y+QIS + Y++L GL+D+VK
Sbjct: 1 MDRKSWPWKKKSSEKTATV--------TEVVDQENGKKPSYIQISFDQYTNLNGLKDEVK 52
Query: 389 TYEEKVQKLEDEMQEMNEKLSAANSEIETKEGMVKQHAKVAEEAVSGWEKAEAEALALKN 568
+YEEKV KLED++++++ KLS AN++I KE +VKQH+KVAEEAV+GWEKAEAEA ALK
Sbjct: 53 SYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKT 112
Query: 569 HLESVTLLKLT 601
HLE++TL KLT
Sbjct: 113 HLETITLAKLT 123
>ref|NP_173412.1| unknown protein; protein id: At1g19835.1 [Arabidopsis thaliana]
Length = 982
Score = 153 bits (386), Expect = 2e-36
Identities = 76/131 (58%), Positives = 103/131 (78%), Gaps = 1/131 (0%)
Frame = +2
Query: 212 MDRR-WPWKKKSSDKAVPEKVAVALDSSEASNQDSSKKPNYVQISVESYSHLTGLEDQVK 388
MDR+ WPWKKKSS+K +E +Q++ KKP+Y+QIS + Y++L GL+D+VK
Sbjct: 1 MDRKSWPWKKKSSEKTATV--------TEVVDQENGKKPSYIQISFDQYTNLNGLKDEVK 52
Query: 389 TYEEKVQKLEDEMQEMNEKLSAANSEIETKEGMVKQHAKVAEEAVSGWEKAEAEALALKN 568
+YEEKV KLED++++++ KLS AN++I KE +VKQH+KVAEEAV+GWEKAEAEA ALK
Sbjct: 53 SYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKT 112
Query: 569 HLESVTLLKLT 601
HLE++TL KLT
Sbjct: 113 HLETITLAKLT 123
>ref|NP_175226.1| mysoin-like protein; protein id: At1g47900.1 [Arabidopsis thaliana]
gi|25405242|pir||D96519 mysoin-like protein, 11013-7318
[imported] - Arabidopsis thaliana
gi|12323626|gb|AAG51782.1|AC079679_2 mysoin-like
protein; 11013-7318 [Arabidopsis thaliana]
Length = 1054
Score = 151 bits (382), Expect = 6e-36
Identities = 86/174 (49%), Positives = 109/174 (62%), Gaps = 43/174 (24%)
Frame = +2
Query: 212 MDRR-WPWKKKSSDKAVPEKVAVALDSSEASNQDSSKKPNYVQISVESYSHLTGLEDQVK 388
MDRR WPWKKK+SDK++ + A S ++++ KKP YVQISVE Y+H TGLE+Q+K
Sbjct: 1 MDRRSWPWKKKASDKSILVIDSAADASHSQIDKEAIKKPKYVQISVEQYTHFTGLEEQIK 60
Query: 389 T------------------------------------------YEEKVQKLEDEMQEMNE 442
+ YEE+VQKL ++++++NE
Sbjct: 61 SYDVQIKGYDVQVKTYENQVESYEEQVKDFEEQIDAYDEKVHEYEEQVQKLNEDVEDLNE 120
Query: 443 KLSAANSEIETKEGMVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLLKLTA 604
KLS AN EI TKE +VKQH+KVAE+AVSGWEKA+AEALALKN LESVTL KLTA
Sbjct: 121 KLSVANEEIVTKEALVKQHSKVAEDAVSGWEKADAEALALKNTLESVTLSKLTA 174
>ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [Arabidopsis thaliana]
gi|7487187|pir||T05505 hypothetical protein T19K4.250 -
Arabidopsis thaliana gi|3036816|emb|CAA18506.1|
myosin-like protein [Arabidopsis thaliana]
gi|7270564|emb|CAB81521.1| myosin-like protein
[Arabidopsis thaliana]
Length = 981
Score = 145 bits (366), Expect = 4e-34
Identities = 77/138 (55%), Positives = 98/138 (70%), Gaps = 9/138 (6%)
Frame = +2
Query: 218 RRWPWKKKSSDKAVPEKVAVALDSSEA---------SNQDSSKKPNYVQISVESYSHLTG 370
R WPWK+KSSDKA EK V ++S+ NQ+ K NYVQI+++SY+H++
Sbjct: 4 RGWPWKRKSSDKATTEKPVVGIESTPVCSLSYLASLENQEKCKNTNYVQITMDSYTHMSR 63
Query: 371 LEDQVKTYEEKVQKLEDEMQEMNEKLSAANSEIETKEGMVKQHAKVAEEAVSGWEKAEAE 550
+EDQVK +E +V+ L+ EKL+ A+SEI TKE ++ QHAKVAEEAVSGWEKA+AE
Sbjct: 64 MEDQVKLFEVQVKDLK-------EKLTLAHSEINTKESLILQHAKVAEEAVSGWEKADAE 116
Query: 551 ALALKNHLESVTLLKLTA 604
LALK LESVTLLKLTA
Sbjct: 117 TLALKRQLESVTLLKLTA 134
>emb|CAA18118.1| hypothetical protein (fragment) [Arabidopsis thaliana]
Length = 321
Score = 145 bits (366), Expect = 4e-34
Identities = 77/138 (55%), Positives = 98/138 (70%), Gaps = 9/138 (6%)
Frame = +2
Query: 218 RRWPWKKKSSDKAVPEKVAVALDSSEA---------SNQDSSKKPNYVQISVESYSHLTG 370
R WPWK+KSSDKA EK V ++S+ NQ+ K NYVQI+++SY+H++
Sbjct: 4 RGWPWKRKSSDKATTEKPVVGIESTPVCSLSYLASLENQEKCKNTNYVQITMDSYTHMSR 63
Query: 371 LEDQVKTYEEKVQKLEDEMQEMNEKLSAANSEIETKEGMVKQHAKVAEEAVSGWEKAEAE 550
+EDQVK +E +V+ L+ EKL+ A+SEI TKE ++ QHAKVAEEAVSGWEKA+AE
Sbjct: 64 MEDQVKLFEVQVKDLK-------EKLTLAHSEINTKESLILQHAKVAEEAVSGWEKADAE 116
Query: 551 ALALKNHLESVTLLKLTA 604
LALK LESVTLLKLTA
Sbjct: 117 TLALKRQLESVTLLKLTA 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,555,798
Number of Sequences: 1393205
Number of extensions: 10832361
Number of successful extensions: 45645
Number of sequences better than 10.0: 719
Number of HSP's better than 10.0 without gapping: 39599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44827
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
